TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000660_2.0 # Protein # Thioredoxin reductase 2 (TXNRD2) # Zebrafish Length=486 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000073.1 Miichthys miiuy scaffold73, whole genome shotgun... 103 6e-22 JXSJ01000728.1 Miichthys miiuy scaffold728, whole genome shotgu... 98.6 3e-20 JXSJ01000302.1 Miichthys miiuy scaffold302, whole genome shotgu... 98.6 3e-20 JXSJ01000182.1 Miichthys miiuy scaffold182, whole genome shotgu... 66.2 6e-10 > JXSJ01000073.1 Miichthys miiuy scaffold73, whole genome shotgun sequence Length=1482782 Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/113 (51%), Positives = 63/113 (56%), Gaps = 45/113 (40%) Frame = -1 Query 20 AAQLGQKVAVLDYVEPSLKG---------------------------------------- 39 AAQ GQ+VAVLDYVEPS++G Sbjct 530960 AAQAGQRVAVLDYVEPSVRGKVHFPEPLVLVNYKKALCISMQLFYLLKI*KTPFLSPVEM 530781 Query 40 -----TKWGLGGTCVNVGCIPKKLMHQAALLGTAVKDARKYGWQIPETLSHDW 87 TKWGLGGTCVNVGCIPKKLMHQAALLGTAVKDA+KYGWQI + HDW Sbjct 530780 LFQTGTKWGLGGTCVNVGCIPKKLMHQAALLGTAVKDAKKYGWQISGPVCHDW 530622 Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 56/108 (52%), Positives = 66/108 (61%), Gaps = 4/108 (4%) Frame = -1 Query 175 WLKESPKKTLIIGASYVSLECAGFLTGI-GLDTSVMVRSIALRGFDQQMSGLVTDYMETY 233 WL SP LI Y SL + +G D + R I F QQM+GLVT YME Y Sbjct 523916 WLAASPSGGLI---RYCSLNYSLPYSGHHDSDFCHV*R*ILFFWFVQQMAGLVTGYMEEY 523746 Query 234 GTKFHWKCTPKSVEKLPSGHLQVTWMDLNTKEEHQDTFNSVLWAVGRA 281 GTKF WKC PK V+KL SG LQVTW D T EH+DT+++VLWAVG + Sbjct 523745 GTKFAWKCVPKRVDKLSSGALQVTWTDTRTGNEHKDTYDTVLWAVGES 523602 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/46 (74%), Positives = 42/46 (91%), Gaps = 0/46 (0%) Frame = -1 Query 279 GRAPETKTLNLEKVGVKINKETGKIIVAADEATSVPNIFAIGDIGE 324 GRAPETK L L+++GV++NKETGKI+V ADE+TSVPNI+A GDIGE Sbjct 517607 GRAPETKALGLDRLGVQLNKETGKIVVGADESTSVPNIYAFGDIGE 517470 Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 35/47 (74%), Positives = 39/47 (83%), Gaps = 0/47 (0%) Frame = -2 Query 440 ALGFQCGLTYEHLRNTVGIHPTCAEELTKLNITKRSGLDATVTGCXG 486 + F+CG TY HL TVGIHPT AEE+TK+NITKRSGLDATVTGC G Sbjct 512797 CMCFRCGATYSHLSQTVGIHPTSAEEITKVNITKRSGLDATVTGC*G 512657 Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/33 (91%), Positives = 31/33 (94%), Gaps = 0/33 (0%) Frame = -1 Query 325 GRPELTPTAIKAGKLLAHRLAGRSTELMNYENV 357 GRPELTPTAIKAGKLLA RLAG STELMNY+NV Sbjct 516461 GRPELTPTAIKAGKLLARRLAGHSTELMNYDNV 516363 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/33 (85%), Positives = 30/33 (91%), Gaps = 0/33 (0%) Frame = -3 Query 412 VVCLREGDQRVLGLHFTGPNAGEVTQGFALGFQ 444 VVC R GD ++LGLHFTGPNAGEVTQGFALGFQ Sbjct 513477 VVCERGGDMKILGLHFTGPNAGEVTQGFALGFQ 513379 Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/34 (82%), Positives = 31/34 (91%), Gaps = 0/34 (0%) Frame = -3 Query 189 SYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQM 222 S V+LECAGFLTGIGLDT+VM RSIALRGFDQ + Sbjct 523977 SDVALECAGFLTGIGLDTTVMARSIALRGFDQVL 523876 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/38 (74%), Positives = 31/38 (82%), Gaps = 0/38 (0%) Frame = -1 Query 356 NVATTVFTPLEYGCVGLSEEEAERRHGKDQIEVYHAFY 393 V TTVFTPLEYGCVGLSEEEAE+R GKD IEV ++ Sbjct 515600 QVPTTVFTPLEYGCVGLSEEEAEKRLGKDGIEVRCMWW 515487 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/25 (96%), Positives = 24/25 (96%), Gaps = 0/25 (0%) Frame = -2 Query 88 PTMAEAVQNHVRSLNWGHRVQLQDK 112 TMAEAVQNHVRSLNWGHRVQLQDK Sbjct 530089 ATMAEAVQNHVRSLNWGHRVQLQDK 530015 Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/24 (92%), Positives = 24/24 (100%), Gaps = 0/24 (0%) Frame = -2 Query 389 YHAFYKPLEFTVAERDATQCYIKV 412 YHAFYKPLEFTVAERDA+QCY+KV Sbjct 513985 YHAFYKPLEFTVAERDASQCYLKV 513914 Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/25 (76%), Positives = 21/25 (84%), Gaps = 0/25 (0%) Frame = -3 Query 159 HVPGAMEFGITSDDIFWLKESPKKT 183 + GAME GITSDDIFWLK+SP KT Sbjct 527985 QIQGAMEHGITSDDIFWLKKSPGKT 527911 Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 26/32 (81%), Gaps = 0/32 (0%) Frame = -3 Query 109 LQDKKVKYLNMKGTLLDKHTVRAVNAQGKEMT 140 L +KVKYLN+KG+L+D+HTV+ + GKE++ Sbjct 528780 LSCRKVKYLNLKGSLMDEHTVKGLTKAGKEVS 528685 > JXSJ01000728.1 Miichthys miiuy scaffold728, whole genome shotgun sequence Length=143256 Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/79 (59%), Positives = 56/79 (71%), Gaps = 0/79 (0%) Frame = -1 Query 169 TSDDIFWLKESPKKTLIIGASYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQMSGLVTD 228 TSDD+F L P KTL+IGASYV+LEC GFL G+GLD +VMVRSI LRGFDQ M+ + Sbjct 140430 TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQDMANRAGE 140251 Query 229 YMETYGTKFHWKCTPKSVE 247 +ME +G KF K P V Sbjct 140250 HMEEHGVKFLRKYVPIKVS 140194 Score = 69.7 bits (169), Expect(2) = 5e-18, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 35/45 (78%), Gaps = 0/45 (0%) Frame = -3 Query 420 QRVLGLHFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCAE 464 RV+G H+ GPNAGEVTQGF + +CG T E L +T+GIHPTCAE Sbjct 135574 DRVIGFHYLGPNAGEVTQGFGIAMKCGATKEQLDSTIGIHPTCAE 135440 Score = 44.3 bits (103), Expect(2) = 5e-18, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 27/41 (66%), Gaps = 0/41 (0%) Frame = -1 Query 387 EVYHAFYKPLEFTVAERDATQCYIKVVCLREGDQRVLGLHF 427 +V+H+ + PLEFTV RD +CY K++C + R L ++F Sbjct 135786 QVFHSLFWPLEFTVPGRDNNRCYAKIICNKLDSVRFLFIYF 135664 Score = 75.9 bits (185), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 33/40 (83%), Positives = 37/40 (93%), Gaps = 0/40 (0%) Frame = -1 Query 43 GLGGTCVNVGCIPKKLMHQAALLGTAVKDARKYGWQIPET 82 GLGGTCVNVGCIPKKLMHQ ALLGTA++DARK+GW+ ET Sbjct 141885 GLGGTCVNVGCIPKKLMHQTALLGTAMQDARKFGWEFDET 141766 Score = 36.2 bits (82), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 16/26 (62%), Positives = 19/26 (73%), Gaps = 0/26 (0%) Frame = -2 Query 18 KEAAQLGQKVAVLDYVEPSLKGTKWG 43 +EAA LG+K VLDYV P+ KG WG Sbjct 142046 QEAAMLGKKTMVLDYVVPTPKGASWG 141969 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 11/88 (13%) Frame = -1 Query 283 ETKTLNLEKVGVKINK----------ETGKIIVAADEATSVPNIFAIGDIGEGRPELTPT 332 K ++L GVK+N+ GKI V +E T+VP+I+AIGDI EG+ ELTP Sbjct 137790 RVKIISLCNNGVKLNQSAVCSSSLTSRNGKIPVNDEEQTNVPHIYAIGDILEGKWELTPV 137611 Query 333 AIKAGKLLAHRL-AGRSTELMNYENVAT 359 AI+AGKLLA RL AG ++ + V T Sbjct 137610 AIQAGKLLARRLYAGAKLKVHSLSTVKT 137527 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/56 (43%), Positives = 34/56 (61%), Gaps = 0/56 (0%) Frame = -2 Query 83 LSHDWPTMAEAVQNHVRSLNWGHRVQLQDKKVKYLNMKGTLLDKHTVRAVNAQGKE 138 + H+W TM AV N++ SLNWG+RV L+DK V Y+N +D H ++ KE Sbjct 141629 VKHNWETMKSAVNNYIGSLNWGYRVALRDKNVNYVNAYAEFIDPHKIKVSTCDMKE 141462 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/36 (67%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Frame = -1 Query 353 NYENVATTVFTPLEYGCVGLSEEEAERRHGKDQIEV 388 +Y NV TTVFTPLEYG GLSEE A +G+D IEV Sbjct 137028 DYINVPTTVFTPLEYGACGLSEERATELYGQDNIEV 136921 > JXSJ01000302.1 Miichthys miiuy scaffold302, whole genome shotgun sequence Length=345455 Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/79 (59%), Positives = 56/79 (71%), Gaps = 0/79 (0%) Frame = +1 Query 169 TSDDIFWLKESPKKTLIIGASYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQMSGLVTD 228 TSDD+F L P KTL+IGASYV+LEC GFL G+GLD +VMVRSI LRGFDQ M+ + Sbjct 320392 TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQDMANRAGE 320571 Query 229 YMETYGTKFHWKCTPKSVE 247 +ME +G KF K P V Sbjct 320572 HMEEHGVKFLRKYVPIKVS 320628 Score = 69.7 bits (169), Expect(2) = 5e-18, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 35/45 (78%), Gaps = 0/45 (0%) Frame = +2 Query 420 QRVLGLHFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCAE 464 RV+G H+ GPNAGEVTQGF + +CG T E L +T+GIHPTCAE Sbjct 325250 DRVIGFHYLGPNAGEVTQGFGIAMKCGATKEQLDSTIGIHPTCAE 325384 Score = 44.3 bits (103), Expect(2) = 5e-18, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 27/41 (66%), Gaps = 0/41 (0%) Frame = +3 Query 387 EVYHAFYKPLEFTVAERDATQCYIKVVCLREGDQRVLGLHF 427 +V+H+ + PLEFTV RD +CY K++C + R L ++F Sbjct 325038 QVFHSLFWPLEFTVPGRDNNRCYAKIICNKLDSVRFLFIYF 325160 Score = 75.9 bits (185), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 33/40 (83%), Positives = 37/40 (93%), Gaps = 0/40 (0%) Frame = +1 Query 43 GLGGTCVNVGCIPKKLMHQAALLGTAVKDARKYGWQIPET 82 GLGGTCVNVGCIPKKLMHQ ALLGTA++DARK+GW+ ET Sbjct 318937 GLGGTCVNVGCIPKKLMHQTALLGTAMQDARKFGWEFDET 319056 Score = 36.2 bits (82), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 16/26 (62%), Positives = 19/26 (73%), Gaps = 0/26 (0%) Frame = +2 Query 18 KEAAQLGQKVAVLDYVEPSLKGTKWG 43 +EAA LG+K VLDYV P+ KG WG Sbjct 318776 QEAAMLGKKTMVLDYVVPTPKGASWG 318853 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 11/88 (13%) Frame = +1 Query 283 ETKTLNLEKVGVKINK----------ETGKIIVAADEATSVPNIFAIGDIGEGRPELTPT 332 K ++L GVK+N+ GKI V +E T+VP+I+AIGDI EG+ ELTP Sbjct 323032 RVKIISLCNNGVKLNQSAVCSSSLTSRNGKIPVNDEEQTNVPHIYAIGDILEGKWELTPV 323211 Query 333 AIKAGKLLAHRL-AGRSTELMNYENVAT 359 AI+AGKLLA RL AG ++ + V T Sbjct 323212 AIQAGKLLARRLYAGAKLKVHSLSTVKT 323295 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/56 (43%), Positives = 34/56 (61%), Gaps = 0/56 (0%) Frame = +2 Query 83 LSHDWPTMAEAVQNHVRSLNWGHRVQLQDKKVKYLNMKGTLLDKHTVRAVNAQGKE 138 + H+W TM AV N++ SLNWG+RV L+DK V Y+N +D H ++ KE Sbjct 319193 VKHNWETMKSAVNNYIGSLNWGYRVALRDKNVNYVNAYAEFIDPHKIKVSTCDMKE 319360 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/36 (67%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Frame = +1 Query 353 NYENVATTVFTPLEYGCVGLSEEEAERRHGKDQIEV 388 +Y NV TTVFTPLEYG GLSEE A +G+D IEV Sbjct 323794 DYINVPTTVFTPLEYGACGLSEERATELYGQDNIEV 323901 > JXSJ01000182.1 Miichthys miiuy scaffold182, whole genome shotgun sequence Length=551014 Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 0/74 (0%) Frame = +2 Query 169 TSDDIFWLKESPKKTLIIGASYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQMSGLVTD 228 +S+D+ L + P +TL++G S LECAGFL G+GL ++M + L GFDQ M+ + + Sbjct 4214 SSEDLLSLTQPPGRTLVVGGSAEGLECAGFLFGLGLPVTIMPQPHLLPGFDQGMAQKIEN 4393 Query 229 YMETYGTKFHWKCT 242 +M G F + C+ Sbjct 4394 HMIVNGVDFLYNCS 4435 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/46 (54%), Positives = 32/46 (70%), Gaps = 0/46 (0%) Frame = +2 Query 419 DQRVLGLHFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCAE 464 +RV+GLH GPNAG++ QGF +CGLT + L TVGIHP A+ Sbjct 8615 QERVVGLHVMGPNAGDILQGFVAAMKCGLTKQQLDATVGIHPGTAQ 8752 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/123 (32%), Positives = 55/123 (45%), Gaps = 33/123 (27%) Frame = +3 Query 274 VLWAVGRAPETKTLNLEKVGVKINKE--------------------------------TG 301 VL AVGR T + LE VGV+ N+E TG Sbjct 6162 VLLAVGRKASTSDIGLECVGVQCNQECV*SVHIHFGFNLGAEGFVKVLCVCVCVCVCSTG 6341 Query 302 KIIVAADEATSVPNIFAIGDIGEGRPELTPTAIKAGKLLAHRLAGRSTELMNYENVATTV 361 +I+V + TSV NI+AIG + GRP T ++ +G LLA RL R +++ + T+ Sbjct 6342 RILVNERDETSVDNIYAIGSVQHGRPSTTGLSVHSGTLLARRLY-RDDDILVHSLEIVTL 6518 Query 362 FTP 364 P Sbjct 6519 IVP 6527 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/101 (30%), Positives = 41/101 (41%), Gaps = 39/101 (39%) Frame = +2 Query 353 NYENVATTVFTPLEYGCVGLSEEEAERRHGKDQIE------------------------- 387 +Y NV T V TP+EY GLSEE+A G+ +E Sbjct 6725 DYTNVPTVVLTPMEYAACGLSEEKATLTFGEPNVEVHSHSHTHTHTHTQAMHTQTNKSSH 6904 Query 388 --------------VYHAFYKPLEFTVAERDATQCYIKVVC 414 VYH+ Y PLE+ + R+ CY+KV+C Sbjct 6905 LVK*SKVKMSALLQVYHSHYWPLEWELPARNKYSCYVKVIC 7027 Lambda K H a alpha 0.317 0.135 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 74238509962 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40