genewise output Score 303.27 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000129_2.0 179 KEAAQYGKKVMVLDFVTPTPLGTRW +EAA KKV++LD+V P+P GT QEAAILVKKVLILDLVAPSPRGTVR G:A[gca] JXSJ01000182.1: 1940 cgggatgaagcacgcggctcagagaGGTGAGTG Intron 1 aacctttaattttattccccggctg <1-----[2016 : 2254] gatacggaaggctctgtctaaccgg SPP00000129_2.0 204 LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET LGG+ +N I + + QA+LLG+A+QDS+ YGW+++E LGGSSINSISI-RRFLQQASLLGKAVQDSKAYGWRMKEY JXSJ01000182.1: 2252 CAGCAcggtaaaaaaa aatcccgtccgaggcgtagtgtaaagt -1> tggcgtagtgt ggttaaccttgactaacacagggtaaa gatctcccccc gataaggtagaattactaatcgggagt SPP00000129_2.0 244 KHDWDRMIEAVQNHIGSLNWGYR H W ++EAVQ + + + + V:V[gtg] SHGWSELVEAVQEKVKTRSSELK JXSJ01000182.1: 2371 GGTGATTA Intron 2 CAGTGtcgtagcggggcgagaacatgca <1-----[2372 : 2562]-1> cagggattactaaatacggcata ttagtggggtggggggtctagag SPP00000129_2.0 268 VALREKKVVYENAYGQFIGPHRIK AT L+ V Y A G+++ PH ++ T RELKSCGVYYLKARGEIVAPHTVE VT JXSJ01000182.1: 2634 agcaatggttcagcggaggccaggGTAAACA Intron 3 CAGga gatagggtaatacggattccacta<0-----[2706 : 3992]-0>tc ggggctactccgttagaaagcagg gg SPP00000129_2.0 294 NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS G+++ +AE ++IATG R +YL IPGD+EYC++ EVNGRKRRLTAETLVIATGGRRQYLDIPGDREYCLT JXSJ01000182.1: 3999 ggagaaactaggacgagaggacctcgacggagttca ataggaggtccactttccggggaatatcgagaagtc ggtggaatgaagcgcctaacatgtgcaaacagccac SPP00000129_2.0 330 DDLFSLPYCPGKTLVVGASYVAL +DL+SL PG+TLVVG S L S:C[tgt] EDLLSLTQPPGRTLVVGGSAEGL JXSJ01000182.1: 4107 TGGTCAGCC Intron 4 CAGTggcctcacccgcacggggtgggt <2-----[4109 : 4217]-2> aattctcaccggctttggccagt gtcctatagatgcggacgtaggg SPP00000129_2.0 354 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV ECAGFL G+GL VT+M + LL GFDQ MA KI HM +G+ F+ ECAGFLFGLGLPVTIMPQPHLLPGFDQGMAQKIENHMIVNGVDFLYNCS JXSJ01000182.1: 4288 gtggtctgcgccgaaacccccccgtgcgagcaagacaagagggtctatt agcgtttgtgtctcttcacattcgtaagtcaataaatttagtattaagc gctccgtccgagaccggatcacagttgagaggagccgttcaaccctcta SPP00000129_2.0 403 PIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT KV ++V S +I+ +N LSKVLNT-------IKVGITSIRKLKILL--FNV JXSJ01000182.1: 4435 caagcaa aaggaataaacaatc tag tgattac tatgtcctgatattt tat ccgagca aaagctctaagaagt ttc SPP00000129_2.0 437 VMLAIGRDACTRKIGLETVGVKINE V+LA+GR A T IGLE VGV+ N+ VLLAVGRKASTSDIGLECVGVQCNQ JXSJ01000182.1: 4510 GTCTTGC Intron 5 CAGgccgggaagtaagagcgtgggctac <0-----[4510 : 6160]-0>tttctggacccgatgtagtgtagaa ggtctggaccctctcggttgggccg SPP00000129_2.0 462 TGKIPVTDEEQTNVPYIYAIGDI TG+I V + ++T+V IYAIG + K:D[gac] TGRILVNERDETSVDNIYAIGSV JXSJ01000182.1: 6236 GAGTGTGTT Intron 6 CAGCagaacgagaggaaggaatgagtg <2-----[6238 : 6333]-2> cggtttaagaacgtaatactgct ccgcggtggtgctattttcaaag SPP00000129_2.0 486 LEDKVELTPVAIQAGRLLAQRLYAGSTVK + T +++ +G LLA+RLY + QHGRPSTTGLSVHSGTLLARRLYRDDDIL JXSJ01000182.1: 6404 ccgcctaagctgctgaccgccctagggatGTACATA Intron 7 aaggccccgtctacgcttcggtagaaatt<0-----[6491 : 6720] gtacccaaccggttgaggccaccatcccg SPP00000129_2.0 515 CDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIE CDY NVPT V+TP+EY ACGLSEEKA FGE N+E CDYTNVPTVVLTPMEYAACGLSEEKATLTFGEPNVE JXSJ01000182.1: 6718 CAGtgtaagcaggcacagtggtgctggagacatggcagg -0>gaacatcctttcctaaccggtcaaacctctgacata ttcccgcttgctaggttattatggacttttaactag SPP00000129_2.0 551 VYHSYFWPLEWTIPSRDNNKCYAKII VYHS++WPLEW +P+R+ CY K+I VYHSHYWPLEWELPARNKYSCYVKVI JXSJ01000182.1: 6829 GTACACT Intron 8 CAGgtcacttccgtgccgaaattttgaga <0-----[6829 : 6945]-0>taagaagctagatccgaaacgatatt gtccccgcgggggtcgtacctttacc SPP00000129_2.0 577 CNTKDN ERVVGFHVLGPNAGEVTQGF C+ D+ ERVVG+HV+GPNAG++ QGF CHIPDH ERVVGLHVMGPNAGDILQGF JXSJ01000182.1: 7024 tcacgcGTAATGT Intron 9 CAGgcgggccgagcagggaccgt gatcaa<0-----[7042 : 8616]-0>agttgtattgcacgattagt cccact gtgttctcgttctatttact SPP00000129_2.0 603 AAALKCGLTKKQLDSTIGIHPVCAEV---FTTLSVTKRSGASI AA+KCGLTK+QLD+T+GIHP A+V F+TL R+ +I VAAMKCGLTKQQLDATVGIHPGTAQVSIPFSTLFHKNRASMAI JXSJ01000182.1: 8677 gggaatgcaacccggaggaccgagcgaacttactcaaagtaga tcctaggtcaaatacctgtacgccatgtctccttaaagcctct tacgattttaagatcagccctggtgccctttaattacgtggtt // Making a A in phase 1 intron Making a V in phase 1 intron Making a C in phase 2 intron Making a D in phase 2 intron >JXSJ01000182.1:subseq(1,58805).pep QEAAILVKKVLILDLVAPSPRGTVRALGGSSINSISIRRFLQQASLLGKAVQDSKAYGWR MKEYVSHGWSELVEAVQEKVKTRSSELKRELKSCGVYYLKARGEIVAPHTVEVTEVNGRK RRLTAETLVIATGGRRQYLDIPGDREYCLTCEDLLSLTQPPGRTLVVGGSAEGLECAGFL FGLGLPVTIMPQPHLLPGFDQGMAQKIENHMIVNGVDFLYNCSLSKVLNTIKVGITSIRK LKILLFNVVLLAVGRKASTSDIGLECVGVQCNQDTGRILVNERDETSVDNIYAIGSVQHG RPSTTGLSVHSGTLLARRLYRDDDILCDYTNVPTVVLTPMEYAACGLSEEKATLTFGEPN VEVYHSHYWPLEWELPARNKYSCYVKVICHIPDHERVVGLHVMGPNAGDILQGFVAAMKC GLTKQQLDATVGIHPGTAQVSIPFSTLFHKNRASMAI // >JXSJ01000182.1:subseq(1,58805).[1940:8805].sp CAGGAAGCTGCAATCTTGGTGAAAAAAGTGCTGATCCTTGACCTTGTGGCTCCCTCTCCA AGAGGCACCGTGAGGGCACTGGGAGGTTCCAGTATCAACAGCATCAGCATCAGGAGATTT CTACAACAGGCGTCTCTACTGGGAAAAGCTGTTCAAGACTCTAAAGCATATGGCTGGAGG ATGAAAGAGTATGTGTCTCATGGATGGAGTGAGCTGGTGGAGGCTGTGCAGGAGAAGGTG AAGACTCGCAGTTCAGAGCTAAAGAGGGAGCTGAAGAGCTGTGGAGTCTATTACCTCAAG GCTCGTGGAGAGATAGTAGCACCGCACACAGTGGAGGTGACGGAGGTGAATGGGAGGAAA AGACGTTTGACAGCAGAGACCCTGGTCATCGCTACAGGAGGCAGACGTCAGTATCTGGAC ATACCAGGAGACAGAGAGTACTGCCTAACCTGTGAGGATCTCCTCTCTCTAACTCAACCG CCAGGTCGGACCCTGGTGGTAGGCGGGTCTGCAGAGGGGTTGGAGTGCGCTGGCTTCCTG TTTGGCCTCGGGCTACCGGTAACCATCATGCCGCAACCTCACCTACTCCCAGGGTTTGAT CAGGGAATGGCACAGAAGATAGAGAACCACATGATTGTTAACGGAGTAGACTTCCTCTAT AACTGTTCACTCAGCAAGGTACTGAACACAATAAAAGTAGGGATCACTTCCATTAGAAAA CTGAAAATATTGCTTTTTAATGTCGTGCTGCTTGCCGTTGGGAGGAAAGCCTCCACCAGT GACATTGGCCTGGAGTGTGTTGGGGTGCAGTGCAACCAGGACACCGGCAGGATCCTGGTG AATGAGAGGGATGAGACCAGTGTAGATAATATTTATGCCATAGGATCAGTGCAGCATGGA CGCCCCTCCACAACAGGCCTCTCGGTGCATTCTGGGACACTGCTGGCCCGCCGACTCTAC AGAGATGACGACATCTTGTGTGATTACACCAACGTGCCCACTGTTGTGCTCACTCCAATG GAGTATGCTGCATGTGGTCTATCTGAGGAGAAAGCCACTCTTACTTTTGGAGAACCCAAT GTAGAGGTGTATCACAGCCACTACTGGCCCCTGGAGTGGGAGCTGCCTGCCAGGAATAAA TACTCCTGTTATGTTAAAGTCATCTGCCACATCCCAGACCATGAGCGTGTGGTTGGTCTC CATGTCATGGGTCCTAACGCTGGAGATATTCTTCAAGGCTTTGTTGCAGCCATGAAATGT GGTCTTACTAAACAACAGCTAGATGCCACAGTGGGCATCCACCCTGGGACGGCTCAGGTC AGCATCCCTTTTTCTACACTATTTCATAAAAACAGGGCTTCGATGGCTATT // JXSJ01000182.1:subseq(1,58805) GeneWise match 1940 8805 312.26 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 1940 2015 0.00 + 0 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 2016 2254 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 2255 2371 0.00 + 2 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 2372 2562 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 2563 2705 0.00 + 2 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 2706 3992 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 3993 4108 0.00 + 0 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 4109 4217 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 4218 4509 0.00 + 1 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 4510 6160 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 6161 6237 0.00 + 0 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 6238 6333 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 6334 6490 0.00 + 1 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 6491 6720 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 6721 6828 0.00 + 0 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 6829 6945 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 6946 7041 0.00 + 0 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise intron 7042 8616 0.00 + . JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 JXSJ01000182.1:subseq(1,58805) GeneWise cds 8617 8805 0.00 + 0 JXSJ01000182.1:subseq(1,58805)-genewise-prediction-1 //