Command line: [exonerate -m p2g --showtargetgff -q ttpa_hs.aa.fa.canviat -t genomettpa_JXSJ01001106.1.fa] Hostname: [ws101183u] C4 Alignment: ------------ Query: SPP00002946_2.0 # Protein # tocopherol (alpha) transfer proteins (TTPA) # Human Target: JXSJ01001106.1:subseq(11548,68352) Miichthys miiuy scaffold1106, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 767 Query range: 10 -> 275 Target range: 54468 -> 49999 11 : GlyProGlnLeuAsnAlaLeuProAspHisSerProLeuLeuGlnProGlyLeuAlaAla : 30 ||||||||||||!:!! !|||||||||.!.||| !|||||| !||| !:!!::!::! GlyProGlnLeuSerGluLeuProAspGluSerGluLeuLeuGlyProTyrValSerSer 54468 : GGGCCTCAGCTCAGTGAACTCCCGGACGAGTCGGAGTTACTCGGGCCGTATGTGAGCAGC : 54411 31 : LeuArgArgArgAlaArgGluAlaGlyValProLeuAlaProLeuProLeuThrAspSer : 50 |||||||||||||||! !:!!||||||! !! !! !||| ! ! !!!!!:!!|||.!! LeuArgArgArgAlaLeuGlnAlaGlyGluLeuSerAlaValArgThrPheSerAspGly 54410 : CTGAGGCGGAGAGCGCTGCAGGCCGGCGAGCTGTCCGCTGTCAGGACGTTCTCCGACGGC : 54351 51 : PheLeuLeuArgPheLeuArgAlaArgAspPheAspLeuAspLeuAlaTrpArg >>>> : 69 ||||||:!!!:!||||||||||||||||||||||||:!!!!:|||:!! !!:! PheLeuMetLysPheLeuArgAlaArgAspPheAspValGluLeuSerLeuLys++ 54350 : TTTCTCATGAAGTTTCTTCGGGCCAGAGACTTCGACGTGGAGCTCTCTCTGAAGgt.... : 54292 70 : Target Intron 1 >>>> LeuLeuLysAsnTyrTyrLysTrpArgAlaGluCysP : 81 1740 bp |||||| !|||||| ! ::!|||||| !||| !!| ++LeuLeuLeuAsnTyrGlnArgTrpArgArgGluSerP 54291 : .....................agCTCTTATTGAACTACCAGCGGTGGCGGAGAGAAAGTC : 52518 82 : roGluIleSerAlaAspLeuHisProArgSerIleIleGlyLeuLeuLysAlaGlyTyrH : 101 |||||||||||.!! !||| ||| !|||:!::!!|||||||||!!..!!..!|||| roGluIleSerThrCysLeuSerProSerSerValLeuGlyLeuLeuAsnThrSerTyrH 52517 : CAGAGATCAGCACCTGTCTGTCGCCCTCCTCGGTGCTCGGCCTCCTCAACACGTCGTACC : 52458 102 : isGlyValLeuArgSerArgAspProThrGlySerLysValLeuIleTyrArgIle{A} : 120 ||!.!..!|||! !..!||||||! !|||||||||!:!||||||||||||||||||{|} isAlaThrLeuProGlnArgAspHisThrGlySerArgValLeuIleTyrArgIle{A}+ 52457 : ATGCCACCCTCCCACAGCGAGACCACACTGGCAGCAGGGTCCTCATCTACAGGATT{G}g : 52400 121 : >>>> Target Intron 2 >>>> {la}HisTrpAspProLysValPheThrAlaT : 130 1434 bp {||}!!.|||..!||||||! !!:::!!|||! + ++{la}GlnTrpSerProLysAspTrpSerAlaP 52399 : t.........................ag{cG}CAGTGGAGCCCAAAAGACTGGTCGGCAT : 50937 131 : yrAspValPheArgValSerLeuIleThrSerGluLeuIleValGlnGluValGluThrG : 150 :!.!.||||||||||||||||||!!:|||||||||:!!||| !..!|||..!||||||| heGlnValPheArgValSerLeuMetThrSerGluIleIleSerMetGluThrGluThrG 50936 : TCCAGGTGTTCAGGGTCAGCCTGATGACGTCAGAGATCATCTCCATGGAGACAGAGACGC : 50877 151 : lnArgAsnGlyIleLysAlaIlePheAspLeuGluGlyTrpGlnPheSerHisAlaPheG : 170 |||||...|||:!:||||||||||||||||||:!!|||||| .!..!!||||||.!.| lnArgArgGlyLeuLysAlaIlePheAspLeuGlnGlyTrpThrLeuGlyHisAlaLeuG 50876 : AGAGGCGGGGTCTGAAGGCCATATTTGACCTGCAGGGGTGGACTCTAGGCCACGCCCTGC : 50817 171 : lnIleThrProSerValAlaLysLysIleAlaAlaValLeuThr >>>> Target In : 185 ||||||||||||||:!!|||!:!||||||:!!:!!||||||:!! 363 lnIleThrProSerLeuAlaArgLysIleSerSerValLeuSer++ 50816 : AGATTACCCCTTCCCTTGCCAGAAAGATATCCTCTGTACTTTCGgt.............. : 50770 186 : tron 3 >>>> AspSerPheProLeuLysValArgGlyIleHisLeuIleAsnGluPr : 200 bp ||||||||||||||||||||||||||||||||||||:!!|||||||| ++AspSerPheProLeuLysValArgGlyIleHisLeuValAsnGluPr 50769 : ...........aggactCTTTTCCACTGAAAGTCAGAGGAATACATCTGGTCAATGAGCC : 50364 201 : oValIlePheHisAlaValPheSerMetIleLysProPheLeuThrGluLysIleLysGl : 220 |:!!.!!|||!.. !!|||||||||||||||:::||||||||| !!!!:|||||||||:! oMetPhePheArgProValPheSerMetIleArgProPheLeuProAspLysIleLysGl 50363 : GATGTTCTTCCGGCCGGTCTTCTCCATGATCCGTCCCTTCCTGCCAGATAAGATTAAACA : 50304 221 : uArg >>>> Target Intron 4 >>>> IleHisMetHisGlyAsnAsnTyrLys : 230 !||| 134 bp ||||||||||||||| :!!!:!:!! nArg++ ++IleHisMetHisGlyAlaAspPheGln 50303 : GAGGgt.........................agATCCACATGCACGGTGCAGATTTCCAG : 50140 231 : GlnSerLeuLeuGlnHisPhe<->ProAspIleLeuProLeuGluTyrGlyGlyGluGlu : 249 :!!!!!||| !.!. !||| ||| !!:!!||||||! !|||||||||||||||! ! GluThrLeuSerAspPhePheSerProHisValLeuProProGluTyrGlyGlyGluGly 50139 : GAAACTCTGAGTGACTTCTTCTCACCGCACGTCTTGCCTCCAGAATATGGAGGCGAGGGG : 50080 250 : PheSerMetGluAspIleCysGlnGluTrpThrAsnPheIleMetLysSerGluAspTyr : 269 ..!!!:|||.!.:!:||||||!!:||||||!!. :!::!::!!||||||:!! ! ProGluIleGluGlnValCysGlnAspTrpThrLysGlnLeuLeuGlnSerGluAsnLeu 50079 : CCAGAAATAGAACAGGTGTGTCAGGACTGGACCAAACAGCTGCTTCAATCAGAGAATCTC : 50020 270 : LeuSerSerIleSerGlu : 275 |||..!..!|||:!!!!: LeuGlnGlnIleAlaAsp 50019 : CTGCAGCAGATTGCCGAC : 50000 vulgar: SPP00002946_2.0 10 275 . JXSJ01001106.1:subseq(11548,68352) 54468 49999 - 767 M 58 174 5 0 2 I 0 1736 3 0 2 M 51 153 S 0 1 5 0 2 I 0 1430 3 0 2 S 1 2 M 64 192 5 0 2 I 0 359 3 0 2 M 37 111 5 0 2 I 0 130 3 0 2 M 16 48 G 0 3 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local gene 50000 54468 767 - . gene_id 1 ; sequence SPP00002946_2.0 ; gene_orientation + JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local cds 54295 54468 . - . JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local exon 54295 54468 . - . insertions 0 ; deletions 0 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice5 54293 54294 . - . intron_id 1 ; splice_site "GT" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local intron 52555 54294 . - . intron_id 1 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice3 52555 52556 . - . intron_id 0 ; splice_site "AG" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local cds 52401 52554 . - . JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local exon 52401 52554 . - . insertions 0 ; deletions 0 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice5 52399 52400 . - . intron_id 2 ; splice_site "gt" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local intron 50967 52400 . - . intron_id 2 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice3 50967 50968 . - . intron_id 1 ; splice_site "ag" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local cds 50773 50966 . - . JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local exon 50773 50966 . - . insertions 0 ; deletions 0 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice5 50771 50772 . - . intron_id 3 ; splice_site "GT" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local intron 50410 50772 . - . intron_id 3 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice3 50410 50411 . - . intron_id 2 ; splice_site "ag" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local cds 50299 50409 . - . JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local exon 50299 50409 . - . insertions 0 ; deletions 0 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice5 50297 50298 . - . intron_id 4 ; splice_site "GT" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local intron 50165 50298 . - . intron_id 4 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local splice3 50165 50166 . - . intron_id 3 ; splice_site "AG" JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local cds 50000 50164 . - . JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local exon 50000 50164 . - . insertions 3 ; deletions 0 JXSJ01001106.1:subseq(11548,68352) exonerate:protein2genome:local similarity 50000 54468 767 - . alignment_id 1 ; Query SPP00002946_2.0 ; Align 54469 11 174 ; Align 52555 69 153 ; Align 50965 121 192 ; Align 50410 185 111 ; Align 50165 222 48 ; Align 50114 238 114 # --- END OF GFF DUMP --- # -- completed exonerate analysis