TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00002946_2.0 # Protein # tocopherol (alpha) transfer proteins (TTPA) # Human Length=278 Score E Sequences producing significant alignments: (Bits) Value JXSJ01001106.1 Miichthys miiuy scaffold1106, whole genome shotg... 89.0 5e-18 JXSJ01000001.1 Miichthys miiuy scaffold1, whole genome shotgun ... 52.8 3e-06 JXSJ01000802.1 Miichthys miiuy scaffold802, whole genome shotgu... 52.0 4e-06 JXSJ01000908.1 Miichthys miiuy scaffold908, whole genome shotgu... 49.3 3e-05 JXSJ01001871.1 Miichthys miiuy scaffold1871, whole genome shotg... 47.4 1e-04 > JXSJ01001106.1 Miichthys miiuy scaffold1106, whole genome shotgun sequence Length=79985 Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 0/60 (0%) Frame = -2 Query 120 AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKI 179 A W PK ++A+ VFRVSL+TSE+I E ETQR G+KAIFDL+GW HA QITPS+A+KI Sbjct 62515 AQWSPKDWSAFQVFRVSLMTSEIISMETETQRRGLKAIFDLQGWTLGHALQITPSLARKI 62336 Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/38 (74%), Positives = 34/38 (89%), Gaps = 0/38 (0%) Frame = -2 Query 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222 DSFPLKVRGIHL+NEP+ F VFSMI+PFL +KIK+R+ Sbjct 61957 DSFPLKVRGIHLVNEPMFFRPVFSMIRPFLPDKIKQRV 61844 Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/51 (57%), Positives = 34/51 (67%), Gaps = 0/51 (0%) Frame = -2 Query 72 NYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHW 122 NY +WR E PEIS L P S++GLL YH L RD TGS+VLIYRI + Sbjct 64093 NYQRWRRESPEISTCLSPSSVLGLLNTSYHATLPQRDHTGSRVLIYRIGQY 63941 Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/56 (43%), Positives = 40/56 (71%), Gaps = 1/56 (2%) Frame = -1 Query 221 RIHMHGNNYKQSLLQHF-PDILPLEYGGEEFSMEDICQEWTNFIMKSEDYLSSISE 275 +IHMHG +++++L F P +LP EYGGE +E +CQ+WT +++SE+ L I++ Sbjct 61715 QIHMHGADFQETLSDFFSPHVLPPEYGGEGPEIEQVCQDWTKQLLQSENLLQQIAD 61548 > JXSJ01000001.1 Miichthys miiuy scaffold1, whole genome shotgun sequence Length=20211669 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 58/132 (44%), Gaps = 30/132 (23%) Frame = +3 Query 129 AYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT---- 184 A + R + E +++ ETQ NG I + +G+ HA I P+ KK+ +L Sbjct 14448 ASQILRAYCVILEKLLENEETQINGFVLIENFKGFTMQHASGIKPAELKKMVDMLQVRTH 14627 Query 185 --------------------------DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI 218 DSFP + + +H+ ++P F ++++KPF+ K+ Sbjct 14628 SQGKN*FMCNLRAFVFHQSLLLFFVQDSFPARFKAVHVTHQPWYFTTTYNVVKPFMKSKL 14807 Query 219 KERIHMHGNNYK 230 ER+ M + ++ Sbjct 14808 LERVGMEDSCFE 14843 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (63%), Gaps = 0/51 (0%) Frame = +2 Query 73 YYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWD 123 Y ++R E PE+ +L P ++ ++AGY VL SRD G VL++ I +WD Sbjct 13091 YVRFRKEYPELFENLTPEAVRSTIEAGYPVVLPSRDKYGRVVLLFNIENWD 13243 > JXSJ01000802.1 Miichthys miiuy scaffold802, whole genome shotgun sequence Length=127417 Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 19/40 (48%), Positives = 32/40 (80%), Gaps = 0/40 (0%) Frame = +1 Query 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHM 224 D FP++++ +++INEP IF +F++IKPFL EK+ ER+ + Sbjct 26971 DGFPIRIKAVNIINEPRIFKGIFAIIKPFLKEKMAERVTI 27090 Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 0/64 (0%) Frame = +3 Query 120 AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKI 179 W P + D R +T E ++Q ETQ NGI + D G S A P +AKK+ Sbjct 26445 GKWKPNDYPFVDNVRAIYLTLEKLIQPEETQVNGIVILADYTGVGMSQASNPGPFLAKKV 26624 Query 180 AAVL 183 ++L Sbjct 26625 VSIL 26636 > JXSJ01000908.1 Miichthys miiuy scaffold908, whole genome shotgun sequence Length=108564 Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (67%), Gaps = 0/51 (0%) Frame = +1 Query 73 YYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWD 123 Y ++R + PE+ +L P ++ ++AGY G+L+SRD G VL++ I +WD Sbjct 43663 YVRFRKDYPELFENLTPEAVRSTIEAGYPGILQSRDKYGRVVLLFNIENWD 43815 Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/68 (34%), Positives = 41/68 (60%), Gaps = 0/68 (0%) Frame = +3 Query 73 YYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDV 132 Y ++R + PE+ +L P ++ ++AGY G+L+SRD G VL++ I +WD + T +V Sbjct 37605 YVRFRKDYPELFENLTPEAVRSTIEAGYPGILQSRDKYGRVVLLFNIENWDYEEITFDEV 37784 Query 133 FRVSLITS 140 +T+ Sbjct 37785 SEGYWVTT 37808 > JXSJ01001871.1 Miichthys miiuy scaffold1871, whole genome shotgun sequence Length=29780 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 17/38 (45%), Positives = 29/38 (76%), Gaps = 0/38 (0%) Frame = -2 Query 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222 DSFP + GIH +N+P HA++++I+PFL +K ++R+ Sbjct 22762 DSFPARFGGIHFVNQPWYIHALYTVIRPFLKDKTRKRV 22649 Lambda K H a alpha 0.320 0.136 0.413 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32703852354 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40