TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000630_2.0 # Protein # Selenophosphate synthetase 2 (SEPHS2) # Zebrafish Length=447 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000927.1 Miichthys miiuy scaffold927, whole genome shotgu... 171 2e-67 JXSJ01000007.1 Miichthys miiuy scaffold7, whole genome shotgun ... 169 5e-43 > JXSJ01000927.1 Miichthys miiuy scaffold927, whole genome shotgun sequence Length=105977 Score = 171 bits (433), Expect(2) = 2e-67, Method: Compositional matrix adjust. Identities = 98/170 (58%), Positives = 113/170 (66%), Gaps = 37/170 (22%) Frame = +2 Query 287 AAALMHKFNAHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLF 346 AA LMHKF AHAATD+TGFG++GHA NLA QQ+N+VAFVIHNLPI++KMAAISKA GNLF Sbjct 78485 AAGLMHKFQAHAATDVTGFGLLGHANNLAAQQRNEVAFVIHNLPILAKMAAISKACGNLF 78664 Query 347 GLLQGTSSETSG-------------------------------GLLICLPREQAARFCAE 375 L+QGTS+ETSG GLL+CLPREQAA+FC+E Sbjct 78665 NLVQGTSAETSGMKAVGSTQQMNEMVR*IFD*NYIFFSSSSSGGLLVCLPREQAAKFCSE 78844 Query 376 MKSSRMgllgagqdggvgdgqqaWIIGIVEKGNRCARIIDKPRIIEVPYR 425 MKS GG G AWIIGIVEKG+R ARIIDKPRII + + Sbjct 78845 MKSQS------SGAGGQGVAGGAWIIGIVEKGDRRARIIDKPRIISLLLK 78976 Score = 108 bits (270), Expect(2) = 2e-67, Method: Compositional matrix adjust. Identities = 58/106 (55%), Positives = 66/106 (62%), Gaps = 27/106 (25%) Frame = +3 Query 215 VCQPNDFILPDGAVPGDVLVLTKPLGTQVAVNAHQWLD---------------------- 252 VC F PDGAVPGDVLVLTKPLGTQVAVNAHQWLD Sbjct 78051 VCLVCVFSRPDGAVPGDVLVLTKPLGTQVAVNAHQWLDQVSKSTLFI*TMCLPSPSFIT* 78230 Query 253 -----IPEKWNKIKLVISREEVEQAYQEAMLNMATLNRTAAALMHK 293 PE+WNKIKLV+++EEV++AYQEAM +MATLNRT + K Sbjct 78231 ILSVCQPERWNKIKLVVTKEEVKEAYQEAMFSMATLNRTGTKHLLK 78368 Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/140 (55%), Positives = 88/140 (63%), Gaps = 47/140 (34%) Frame = +2 Query 131 DPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK------------------- 171 D GRIACANVLSDLYAMGITECDNMLMLLS+SQKMN+K Sbjct 76043 DCVSQGRIACANVLSDLYAMGITECDNMLMLLSISQKMNDKVGSVLG*RMTLLLLMIDCF 76222 Query 172 ----------------------------ERDLVLPLMMKGFRDAAEEGGTSVTGGQTVIN 203 +R+ V+PL+++GFRDAAEEGGTSVTGGQTVIN Sbjct 76223 LLMQLSIFSHTVCTCDDSVSSVCVCLTQDRERVMPLIIRGFRDAAEEGGTSVTGGQTVIN 76402 Query 204 PWIIIGGVASVVCQPNDFIL 223 PWII+GGVASVVCQPN+FI+ Sbjct 76403 PWIIVGGVASVVCQPNEFIM 76462 Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 38/50 (76%), Positives = 42/50 (84%), Gaps = 0/50 (0%) Frame = +3 Query 21 YPAGYQALNPEEHGLDRGFRLTAFSDMKGUGCKVPQETLLKLLQGLEPDR 70 +P GY+ PEEHGL+RGFRLTAFSD+KG GCKVPQE LLKLL GLE DR Sbjct 74256 FPPGYKPFKPEEHGLERGFRLTAFSDLKG*GCKVPQEALLKLLAGLEADR 74405 Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 33/35 (94%), Positives = 34/35 (97%), Gaps = 0/35 (0%) Frame = +1 Query 101 GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 135 G+GMD CVIPLRHGGLSLVQTTDFFYPLVEDPYMM Sbjct 75067 GVGMDCCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 75171 > JXSJ01000007.1 Miichthys miiuy scaffold7, whole genome shotgun sequence Length=7452758 Score = 169 bits (427), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 110/185 (59%), Gaps = 60/185 (32%) Frame = -3 Query 171 KERDLVLPLMMKGFRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPNDFIL------- 223 +ERD V+PL+++GF+DA+EE GTSVTGGQTV+NPW+++GGVA+ VCQPN+FI+ Sbjct 6482613 QERDKVMPLIIQGFKDASEEAGTSVTGGQTVLNPWVVMGGVATTVCQPNEFIMWERLPIT 6482434 Query 224 -------------------------PDGAVPGDVLVLTKPLGTQVAVNAHQWLDI----- 253 PD AVPGDVLVLTKPLGTQVAV HQWLDI Sbjct 6482433 HFFACAVCINLLQK*C*YHCFTFPRPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIVSAPK 6482254 Query 254 -----------------------PEKWNKIKLVISREEVEQAYQEAMLNMATLNRTAAAL 290 PEKWNKIKLV+++E+VE AY EAM+NMA LNRT Sbjct 6482253 *F*LDTSCFLGCALIIFVCFTS*PEKWNKIKLVVTQEDVELAYHEAMMNMARLNRTGKTT 6482074 Query 291 MHKFN 295 ++ F Sbjct 6482073 INVFK 6482059 Score = 72.0 bits (175), Expect(2) = 9e-27, Method: Compositional matrix adjust. Identities = 33/38 (87%), Positives = 35/38 (92%), Gaps = 0/38 (0%) Frame = -2 Query 136 GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEKER 173 GRIACANVLSDLYAMG+TECDNMLMLL VS KM+EK R Sbjct 6482917 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMSEKVR 6482804 Score = 71.2 bits (173), Expect(2) = 9e-27, Method: Compositional matrix adjust. Identities = 30/35 (86%), Positives = 34/35 (97%), Gaps = 0/35 (0%) Frame = -1 Query 101 GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 135 GIGMD+CVIPLRHGGLSLVQTTD+ YP+V+DPYMM Sbjct 6483113 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 6483009 Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 52/72 (72%), Positives = 65/72 (90%), Gaps = 0/72 (0%) Frame = -1 Query 287 AAALMHKFNAHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLF 346 AA LMH FNAHAATDITGFGI+GHA+ LA+QQ+++V+FVIHNLP+++KMAA+SKA GN+F Sbjct 6481496 AAGLMHTFNAHAATDITGFGILGHAQTLARQQRSEVSFVIHNLPVLAKMAAVSKACGNMF 6481317 Query 347 GLLQGTSSETSG 358 GL+ GT ETSG Sbjct 6481316 GLMHGTCPETSG 6481281 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 45/74 (61%), Positives = 50/74 (68%), Gaps = 11/74 (15%) Frame = -2 Query 358 GGLLICLPREQAARFCAEMKSSRMgllgagqdggvgdgqqaWIIGIVEKGNRCARIIDKP 417 GGLLICLPREQAARFCAE+KS + G WIIGIVEKGNR ARIIDKP Sbjct 6480544 GGLLICLPREQAARFCAEIKSPKYGEGHQA-----------WIIGIVEKGNRTARIIDKP 6480398 Query 418 RIIEVPYRGSVVSV 431 RIIEV + + +V Sbjct 6480397 RIIEVAPQAATQNV 6480356 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 27/37 (73%), Gaps = 2/37 (5%) Frame = -1 Query 26 QALNPEEHGLDRGFRLTAFSDMKGUGCKV--PQETLL 60 ++ NPE + LD+ FRLT F+++KG GCKV P + LL Sbjct 6483716 ESFNPESYELDKNFRLTRFAELKGTGCKVRSPYQNLL 6483606 Lambda K H a alpha 0.320 0.137 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 66425962928 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40