TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000629_2.0 # Protein # Selenophosphate synthetase (SEPHS) # Zebrafish Length=392 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000007.1 Miichthys miiuy scaffold7, whole genome shotgun ... 202 8e-55 JXSJ01000927.1 Miichthys miiuy scaffold927, whole genome shotgu... 172 8e-45 > JXSJ01000007.1 Miichthys miiuy scaffold7, whole genome shotgun sequence Length=7452758 Score = 202 bits (514), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 110/185 (59%), Positives = 118/185 (64%), Gaps = 60/185 (32%) Frame = -3 Query 135 KERDKVMPLVIQGFKDASEEAGTSVTGGQTVINPWIVLGGVATTVCQPNEFIM------- 187 +ERDKVMPL+IQGFKDASEEAGTSVTGGQTV+NPW+V+GGVATTVCQPNEFIM Sbjct 6482613 QERDKVMPLIIQGFKDASEEAGTSVTGGQTVLNPWVVMGGVATTVCQPNEFIMWERLPIT 6482434 Query 188 -------------------------PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI----- 217 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI Sbjct 6482433 HFFACAVCINLLQK*C*YHCFTFPRPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIVSAPK 6482254 Query 218 -----------------------PEKWNKIKLVVTQEDVELAYQEAMLNMARLNRTAAGL 254 PEKWNKIKLVVTQEDVELAY EAM+NMARLNRT Sbjct 6482253 *F*LDTSCFLGCALIIFVCFTS*PEKWNKIKLVVTQEDVELAYHEAMMNMARLNRTGKTT 6482074 Query 255 MHTFN 259 ++ F Sbjct 6482073 INVFK 6482059 Score = 149 bits (377), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 77/117 (66%), Positives = 90/117 (77%), Gaps = 3/117 (3%) Frame = -1 Query 209 VAVHQWLD---IPEKWNKIKLVVTQEDVELAYQEAMLNMARLNRTAAGLMHTFNAHAATD 265 V V+Q+L I K ++ Q +++ + ++ + + AAGLMHTFNAHAATD Sbjct 6481631 VFVNQYLFH*LIFMKTEYSAFIMNQFIIQMPF*VSLSLFSLSSLVAAGLMHTFNAHAATD 6481452 Query 266 ITGFGILGHAQNLARQQRTEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSG 322 ITGFGILGHAQ LARQQR+EVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSG Sbjct 6481451 ITGFGILGHAQTLARQQRSEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSG 6481281 Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 69/71 (97%), Positives = 69/71 (97%), Gaps = 0/71 (0%) Frame = -2 Query 322 GGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVAT 381 GGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ AT Sbjct 6480544 GGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQAAT 6480365 Query 382 QNVNTTPGATS 392 QNVN TPGATS Sbjct 6480364 QNVNPTPGATS 6480332 Score = 77.0 bits (188), Expect(2) = 1e-29, Method: Compositional matrix adjust. Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%) Frame = -1 Query 65 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 99 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM Sbjct 6483113 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 6483009 Score = 75.9 bits (185), Expect(2) = 1e-29, Method: Compositional matrix adjust. Identities = 35/38 (92%), Positives = 37/38 (97%), Gaps = 0/38 (0%) Frame = -2 Query 100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKLTEKER 137 GRIACANVLSDLYAMGVTECDNMLMLLGVSNK++EK R Sbjct 6482917 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMSEKVR 6482804 Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 63/102 (62%), Positives = 64/102 (63%), Gaps = 37/102 (36%) Frame = -1 Query 1 MSVRESFNPESYELDKNFRLTRFTELKGTGCK---------------------------- 32 MSVRESFNPESYELDKNFRLTRF ELKGTGCK Sbjct 6483728 MSVRESFNPESYELDKNFRLTRFAELKGTGCKVRSPYQNLLWMHDCLLIVELEMVYRNNV 6483549 Query 33 ---------VPQDVLQKLLESLQENHYQEDEQFLGAVMPRLG 65 VPQDVLQKLLE+LQENHYQEDEQFLGAVMPRLG Sbjct 6483548 *K*CCLCSQVPQDVLQKLLETLQENHYQEDEQFLGAVMPRLG 6483423 > JXSJ01000927.1 Miichthys miiuy scaffold927, whole genome shotgun sequence Length=105977 Score = 172 bits (437), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 94/161 (58%), Positives = 107/161 (66%), Gaps = 36/161 (22%) Frame = +2 Query 251 AAGLMHTFNAHAATDITGFGILGHAQNLARQQRTEVSFVIHNLPVLAKMAAVSKACGNMF 310 AAGLMH F AHAATD+TGFG+LGHA NLA QQR EV+FVIHNLP+LAKMAA+SKACGN+F Sbjct 78485 AAGLMHKFQAHAATDVTGFGLLGHANNLAAQQRNEVAFVIHNLPILAKMAAISKACGNLF 78664 Query 311 GLMHGTCPETSG-------------------------------GLLICLPREQAARFCAE 339 L+ GT ETSG GLL+CLPREQAA+FC+E Sbjct 78665 NLVQGTSAETSGMKAVGSTQQMNEMVR*IFD*NYIFFSSSSSGGLLVCLPREQAAKFCSE 78844 Query 340 IKSPK-----YGEGHQAWIIGIVEKGNRTARIIDKPRIIEV 375 +KS G AWIIGIVEKG+R ARIIDKPRII + Sbjct 78845 MKSQSSGAGGQGVAGGAWIIGIVEKGDRRARIIDKPRIISL 78967 Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/156 (49%), Positives = 90/156 (58%), Gaps = 52/156 (33%) Frame = +2 Query 100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKLTEK------------------------ 135 GRIACANVLSDLYAMG+TECDNMLMLL +S K+ +K Sbjct 76058 GRIACANVLSDLYAMGITECDNMLMLLSISQKMNDKVGSVLG*RMTLLLLMIDCFLLMQL 76237 Query 136 -----------------------ERDKVMPLVIQGFKDASEEAGTSVTGGQTVINPWIVL 172 +R++VMPL+I+GF+DA+EE GTSVTGGQTVINPWI++ Sbjct 76238 SIFSHTVCTCDDSVSSVCVCLTQDRERVMPLIIRGFRDAAEEGGTSVTGGQTVINPWIIV 76417 Query 173 GGVATTVCQPNEFIM--PDNAVPGD---VLVLTKPL 203 GGVA+ VCQPNEFIM N G V V T PL Sbjct 76418 GGVASVVCQPNEFIM*VSSNCCCGSVSWVTVTTLPL 76525 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/99 (55%), Positives = 59/99 (60%), Gaps = 27/99 (27%) Frame = +3 Query 179 VCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLD---------------------- 216 VC F PD AVPGDVLVLTKPLGTQVAV HQWLD Sbjct 78051 VCLVCVFSRPDGAVPGDVLVLTKPLGTQVAVNAHQWLDQVSKSTLFI*TMCLPSPSFIT* 78230 Query 217 -----IPEKWNKIKLVVTQEDVELAYQEAMLNMARLNRT 250 PE+WNKIKLVVT+E+V+ AYQEAM +MA LNRT Sbjct 78231 ILSVCQPERWNKIKLVVTKEEVKEAYQEAMFSMATLNRT 78347 Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 29/35 (83%), Positives = 33/35 (94%), Gaps = 0/35 (0%) Frame = +1 Query 65 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 99 G+GMD CVIPLRHGGLSLVQTTD+ YP+V+DPYMM Sbjct 75067 GVGMDCCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 75171 Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 0/45 (0%) Frame = +3 Query 5 ESFNPESYELDKNFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 49 + F PE + L++ FRLT F++LKG GCKVPQ+ L KLL L+ + Sbjct 74271 KPFKPEEHGLERGFRLTAFSDLKG*GCKVPQEALLKLLAGLEADR 74405 Lambda K H a alpha 0.319 0.135 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 55322386670 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40