Command line: [exonerate -m p2g --showtargetgff -q selenow2_zf.aa.fa.canviat -t genomeselenow2_JXSJ01000888.1.fa]
Hostname: [ws116064U]

C4 Alignment:
------------
         Query: SPP00000658_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish 
        Target: JXSJ01000888.1:subseq(1,52368) Miichthys miiuy scaffold888, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 189
   Query range: 3 -> 69
  Target range: 2037 -> 2368

    4 : LysValLysIleGluTyrCysGlyAlaUnkGlyTyrGluProArgPheGlnGluLeuLysAr :   24
        ::!|||   :!!  !  ! !!||||||   ||||||! !||||||!:!|||||||||   ||
        ArgValPheValProArgSerGlyAla***GlyTyrAlaProArgTyrGlnGluLeuAlaAr
 2038 : CGGGTGTTTGTTCCACGCAGCGGCGCATGAGGATACGCACCCCGCTATCAGGAGCTCGCCCG : 2098

   25 : gGluIleCysGlyAsnCysProAspAlaGluValSerGlyPheValGlyArgArg{G}  >> :   43
        |!  :!!   !.!.!.! !|||||||||!!:|||||||||||||||||||||!:!{|}    
        gValValLysAlaGluPheProAspAlaAspValSerGlyPheValGlyArgGln{G}++  
 2099 : GGTTGTCAAGGCTGAGTTTCCTGATGCGGATGTGTCAGGCTTCGTGGGAAGACAG{G}gt.. : 2158

   44 : >> Target Intron 1 >>>>  {ly}CysPheGluIleGlnIleAsnAspPheLeuVal :   54
                133 bp           {||} !!|||||||||:!!||||||!     |||:!!
                               ++{ly}SerPheGluIleGluIleAsnGlyGlnLeuIle
 2159 : .......................ag{GC}AGCTTCGAGATTGAAATCAACGGGCAGCTGATC : 2321

   55 : PheSerLysLeuGluSerGlyGlyPheProTyrSerGluAspIle :   69
        |||||||||||||||!!!.!!||||||||||||..!!!:|||:!:
        PheSerLysLeuGluThrSerGlyPheProTyrGluAspAspVal
 2322 : TTCTCCAAGCTCGAGACTAGTGGCTTCCCATATGAGGATGATGTG : 2368

vulgar: SPP00000658_2.0 3 69 . JXSJ01000888.1:subseq(1,52368) 2037 2368 + 189 M 39 117 S 0 1 5 0 2 I 0 129 3 0 2 S 1 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	gene	2038	2368	189	+	.	gene_id 1 ; sequence SPP00000658_2.0 ; gene_orientation +
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	cds	2038	2155	.	+	.	
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	exon	2038	2155	.	+	.	insertions 0 ; deletions 0
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	splice5	2156	2157	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	intron	2156	2288	.	+	.	intron_id 1
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	splice3	2287	2288	.	+	.	intron_id 0 ; splice_site "ag"
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	cds	2289	2368	.	+	.	
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	exon	2289	2368	.	+	.	insertions 0 ; deletions 0
JXSJ01000888.1:subseq(1,52368)	exonerate:protein2genome:local	similarity	2038	2368	189	+	.	alignment_id 1 ; Query SPP00000658_2.0 ; Align 2038 4 117 ; Align 2291 44 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis