TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000658_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000888.1 Miichthys miiuy scaffold888, whole genome shotgu...  47.4    8e-06
  JXSJ01000017.1 Miichthys miiuy scaffold17, whole genome shotgun...  47.4    9e-06


> JXSJ01000888.1 Miichthys miiuy scaffold888, whole genome shotgun 
sequence
Length=110671

 Score = 47.4 bits (111),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
 Frame = +2

Query  4     KVKIEYCGAXGYEPRFQELKREICGNCPDAEVSGFVGRRGCF  45
             +V +   GA GY PR+QEL R +    PDA+VSGFVGR+G +
Sbjct  2039  RVFVPRSGA*GYAPRYQELARVVKAEFPDADVSGFVGRQGKW  2164


 Score = 41.2 bits (95),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 31/57 (54%), Gaps = 9/57 (16%)
 Frame = +3

Query  22    LKREICGNCPDAEVSGFVGRR---------GCFEIQINDFLVFSKLESGGFPYSEDI  69
             L   +  N  D + + +  RR         G FEI+IN  L+FSKLE+ GFPY +D+
Sbjct  2199  LTHHLFINIKDGDATYY*RRRV*SYFYEFIGSFEIEINGQLIFSKLETSGFPYEDDV  2369


> JXSJ01000017.1 Miichthys miiuy scaffold17, whole genome shotgun 
sequence
Length=4887435

 Score = 47.4 bits (111),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
 Frame = +1

Query  4       KVKIEYCGAXGYEPRFQELKREICGNCPDAEVSGFVGRRGCF  45
               +V +   GA GY PR+QEL R +    PDA+VSGFVGR+G +
Sbjct  774172  RVFVPRSGA*GYAPRYQELARVVKAEFPDADVSGFVGRQGKW  774297


 Score = 41.2 bits (95),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 31/57 (54%), Gaps = 9/57 (16%)
 Frame = +2

Query  22      LKREICGNCPDAEVSGFVGRR---------GCFEIQINDFLVFSKLESGGFPYSEDI  69
               L   +  N  D + + +  RR         G FEI+IN  L+FSKLE+ GFPY +D+
Sbjct  774332  LTHHLFINIKDGDATYY*RRRV*SYFYEFIGSFEIEINGQLIFSKLETSGFPYEDDV  774502



Lambda      K        H        a         alpha
   0.322    0.143    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5149982650


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40