Command line: [exonerate -m p2g --showtargetgff -q selenow1_zf.aa.fa.canviat -t genomeselenow1_JXSJ01000017.1.fa]
Hostname: [ws116064U]

C4 Alignment:
------------
         Query: SPP00000657_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish 
        Target: JXSJ01000017.1:subseq(724172,100491) Miichthys miiuy scaffold17, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 334
   Query range: 3 -> 95
  Target range: 49999 -> 50491

     4 : GlnIleLysValGluTyrCysGlyGlyUnkGlyTyrGluProArgTyrGlnGluLeuLys :    23
         !:!:!:   |||  !  ! !!|||!.!   ||||||! !||||||||||||||||||   
         ArgValPheValProArgSerGlyAla***GlyTyrAlaProArgTyrGlnGluLeuAla
 50000 : CGGGTGTTTGTTCCACGCAGCGGCGCATGAGGATACGCACCCCGCTATCAGGAGCTCGCC : 50057

    24 : ArgValValThrAlaGluPheThrAspAlaAspValSerGlyPheValGlyArgGln{G} :    43
         |||||||||! !||||||||| !!|||||||||||||||||||||||||||||||||{|}
         ArgValValLysAlaGluPheProAspAlaAspValSerGlyPheValGlyArgGln{G}
 50058 : CGGGTTGTCAAGGCTGAGTTTCCTGATGCGGATGTGTCAGGCTTCGTGGGAAGACAG{G} : 50117

    44 :   >>>> Target Intron 1 >>>>  {ly}SerPheGluIleGluIleAsnGlyGln :    52
                     133 bp           {||}|||||||||||||||||||||||||||
         ++                         ++{ly}SerPheGluIleGluIleAsnGlyGln
 50118 : gt.........................ag{GC}AGCTTCGAGATTGAAATCAACGGGCAG : 50277

    53 : LeuIlePheSerLysLeuGluThrSerGlyPheProTyrGluAspAsp  >>>> Targe :    69
         ||||||||||||||||||||||||||||||||||||||||||||||||            
         LeuIlePheSerLysLeuGluThrSerGlyPheProTyrGluAspAsp++          
 50278 : CTGATCTTCTCCAAGCTCGAGACTAGTGGCTTCCCATATGAGGATGATgt.......... : 50330

    70 : t Intron 2 >>>>  IleMetGlyValIleGlnArgAlaTyrAspGlyGlnProValG :    83
         83 bp            |||:!!..!!.!:!!|||!!!||| !!||||||:!!||||||:
                        ++IleLeuAsnAlaValGlnSerAlaAspAspGlyLysProValG
 50331 : ...............agATCTTGAACGCAGTCCAGAGCGCCGACGATGGGAAACCCGTTC : 50453

    84 : luLysIleThrLysSerGlnProProCysValIleLeu :    95
         !!|||||||||||||||!:: !!||||||||||||:!!
         lnLysIleThrLysSerArgAlaProCysValIleMet
 50454 : AGAAGATCACCAAAAGCCGCGCGCCCTGCGTCATCATG : 50491

vulgar: SPP00000657_2.0 3 95 . JXSJ01000017.1:subseq(724172,100491) 49999 50491 + 334 M 39 117 S 0 1 5 0 2 I 0 129 3 0 2 S 1 2 M 25 75 5 0 2 I 0 79 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	gene	50000	50491	334	+	.	gene_id 1 ; sequence SPP00000657_2.0 ; gene_orientation +
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	cds	50000	50117	.	+	.	
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	exon	50000	50117	.	+	.	insertions 0 ; deletions 0
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	splice5	50118	50119	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	intron	50118	50250	.	+	.	intron_id 1
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	splice3	50249	50250	.	+	.	intron_id 0 ; splice_site "ag"
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	cds	50251	50327	.	+	.	
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	exon	50251	50327	.	+	.	insertions 0 ; deletions 0
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	splice5	50328	50329	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	intron	50328	50410	.	+	.	intron_id 2
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	splice3	50409	50410	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	cds	50411	50491	.	+	.	
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	exon	50411	50491	.	+	.	insertions 0 ; deletions 0
JXSJ01000017.1:subseq(724172,100491)	exonerate:protein2genome:local	similarity	50000	50491	334	+	.	alignment_id 1 ; Query SPP00000657_2.0 ; Align 50000 4 117 ; Align 50253 44 75 ; Align 50411 69 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis