TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000657_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish

Length=95
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000017.1 Miichthys miiuy scaffold17, whole genome shotgun...  56.2    6e-14
  JXSJ01000888.1 Miichthys miiuy scaffold888, whole genome shotgu...  56.2    7e-14


> JXSJ01000017.1 Miichthys miiuy scaffold17, whole genome shotgun 
sequence
Length=4887435

 Score = 56.2 bits (134),  Expect(2) = 6e-14, Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%), Gaps = 0/27 (0%)
 Frame = +2

Query  43      GSFEIEINGQLIFSKLETSGFPYEDDI  69
               GSFEIEINGQLIFSKLETSGFPYEDD+
Sbjct  774422  GSFEIEINGQLIFSKLETSGFPYEDDV  774502


 Score = 40.0 bits (92),  Expect(2) = 6e-14, Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 22/27 (81%), Gaps = 0/27 (0%)
 Frame = +1

Query  69      IMGVIQRAYDGQPVEKITKSQPPCVIL  95
               I+  +Q A DG+PV+KITKS+ PCVI+
Sbjct  774583  ILNAVQSADDGKPVQKITKSRAPCVIM  774663


 Score = 57.8 bits (138),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 0/50 (0%)
 Frame = +1

Query  4       QIKVEYCGGXGYEPRYQELKRVVTAEFTDADVSGFVGRQGSFEIEINGQL  53
               ++ V   G  GY PRYQEL RVV AEF DADVSGFVGRQG +     G +
Sbjct  774172  RVFVPRSGA*GYAPRYQELARVVKAEFPDADVSGFVGRQGKWRDS*RGSI  774321


> JXSJ01000888.1 Miichthys miiuy scaffold888, whole genome shotgun 
sequence
Length=110671

 Score = 56.2 bits (134),  Expect(2) = 7e-14, Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%), Gaps = 0/27 (0%)
 Frame = +3

Query  43    GSFEIEINGQLIFSKLETSGFPYEDDI  69
             GSFEIEINGQLIFSKLETSGFPYEDD+
Sbjct  2289  GSFEIEINGQLIFSKLETSGFPYEDDV  2369


 Score = 40.0 bits (92),  Expect(2) = 7e-14, Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 22/27 (81%), Gaps = 0/27 (0%)
 Frame = +2

Query  69    IMGVIQRAYDGQPVEKITKSQPPCVIL  95
             I+  +Q A DG+PV+KITKS+ PCVI+
Sbjct  2450  ILNAVQSADDGKPVQKITKSRAPCVIM  2530


 Score = 57.8 bits (138),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 0/50 (0%)
 Frame = +2

Query  4     QIKVEYCGGXGYEPRYQELKRVVTAEFTDADVSGFVGRQGSFEIEINGQL  53
             ++ V   G  GY PRYQEL RVV AEF DADVSGFVGRQG +     G +
Sbjct  2039  RVFVPRSGA*GYAPRYQELARVVKAEFPDADVSGFVGRQGKWRDS*RGSI  2188



Lambda      K        H        a         alpha
   0.319    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5149825300


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40