TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000656_2.0 # Protein # Selenoprotein U3 (SELENOU3) # Zebrafish

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun...    111   2e-26


> JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun 
sequence
Length=2573463

 Score =   111 bits (278),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
 Frame = +3

Query  1      VEIGSLWREQAVVLFFLRRFGCQVCRWMAAEVSKLEKDLKAHGIALVGIGPEETGVKEFK  60
              VE+ SLW++Q VVLFFLRRFGCQ+CRWMA+E+SKLE DL+A  + LVG+GPEE G+KEFK
Sbjct  74604  VELQSLWQDQPVVLFFLRRFGCQICRWMASEISKLEPDLRASRVTLVGVGPEEFGLKEFK  74783

Query  61     DGGFFKG  67
              +GGFFKG
Sbjct  74784  EGGFFKG  74804


 Score = 69.3 bits (168),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 31/52 (60%), Positives = 43/52 (83%), Gaps = 0/52 (0%)
 Frame = +3

Query  119    DLLQSGGMLIVAKGGEKVLLHFIQKSPADNPPLEEITKALGISANVQAGEKP  170
              DL+ +   +++ KGG+KVLLHFIQ SP D+ PLE+I+KALGISA V+AG++P
Sbjct  77508  DLMTTPKYILLCKGGDKVLLHFIQDSPGDHLPLEDISKALGISATVKAGQRP  77663


 Score = 50.8 bits (120),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 24/27 (89%), Positives = 26/27 (96%), Gaps = 0/27 (0%)
 Frame = +2

Query  106    KASAEGIQGNFSGDLLQSGGMLIVAKG  132
              +A A+GIQGNFSGDLLQSGGMLIVAKG
Sbjct  76109  QAKADGIQGNFSGDLLQSGGMLIVAKG  76189


 Score = 39.3 bits (90),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 17/22 (77%), Positives = 21/22 (95%), Gaps = 0/22 (0%)
 Frame = +3

Query  85     RYNAINVVPAAMGKKVREIASK  106
              RY A++VVPAA+GKKVREIA+K
Sbjct  75906  RYTAVSVVPAALGKKVREIAAK  75971



Lambda      K        H        a         alpha
   0.319    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 13577676420


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40