TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000652_2.0 # Protein # Selenoprotein U1a (SELENOU1a) # Zebrafish Length=222 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000036.1 Miichthys miiuy scaffold36, whole genome shotgun... 92.0 5e-29 JXSJ01000933.1 Miichthys miiuy scaffold933, whole genome shotgu... 75.9 6e-20 > JXSJ01000036.1 Miichthys miiuy scaffold36, whole genome shotgun sequence Length=2940987 Score = 92.0 bits (227), Expect(2) = 5e-29, Method: Compositional matrix adjust. Identities = 52/118 (44%), Positives = 67/118 (57%), Gaps = 29/118 (25%) Frame = -2 Query 54 NADLKTIDGDERSLKAKALWEKSGAVIMAVRRPGXFLCRE-------------------- 93 N L + ER KAK LWEK+GAVIM VRRPG LCRE Sbjct 1866431 NNALLCLSVHERH-KAKTLWEKTGAVIMVVRRPG*LLCREVRKDMPVYVTLQSLD*FIHA 1866255 Query 94 --------EASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEKQAF 143 EA+ELSSL+ QL +L VPL+AVVKEN+G E+ F+ +F+G++++D K F Sbjct 1866254 IDSLYLLQEAAELSSLQSQLQDLEVPLFAVVKENLGKELDCFKKYFSGKVYVDHKVCF 1866081 Score = 57.4 bits (137), Expect(2) = 5e-29, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 61/109 (56%), Gaps = 27/109 (25%) Frame = -3 Query 141 QAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFILggvfv----------- 189 + FYGP +R M +R+GVW+N RA R G++GN GEGF+LGGVFV Sbjct 1865980 RNFYGPLERWMFLSMVLRIGVWRNLWRANRKGFRGNFRGEGFVLGGVFVIGPGDQVGSNL 1865801 Query 190 ----------------mgsggqgvLLEHREKEFGDKVSLESVLEAAKKV 222 M QG+LLEHREKEFGDKV++ ++L A+K+ Sbjct 1865800 HYKNIYYTCMWMF*RFMLCFLQGILLEHREKEFGDKVNMLALLTTARKM 1865654 Score = 84.3 bits (207), Expect(2) = 9e-26, Method: Compositional matrix adjust. Identities = 40/47 (85%), Positives = 45/47 (96%), Gaps = 0/47 (0%) Frame = -3 Query 94 EASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK 140 EASELSSLKPQL+ELGVPL AVVKENVGTEIQDFR HFAG+I++DE+ Sbjct 1860859 EASELSSLKPQLEELGVPLVAVVKENVGTEIQDFRLHFAGDIYVDEQ 1860719 Score = 53.9 bits (128), Expect(2) = 9e-26, Method: Compositional matrix adjust. Identities = 22/35 (63%), Positives = 29/35 (83%), Gaps = 0/35 (0%) Frame = -1 Query 59 TIDGDERSLKAKALWEKSGAVIMAVRRPGXFLCRE 93 + D++ +KAK+LWE +GAV+MAVRRPG FLCRE Sbjct 1861053 VLSADQKVIKAKSLWETNGAVVMAVRRPG*FLCRE 1860949 Score = 85.5 bits (210), Expect(2) = 2e-21, Method: Compositional matrix adjust. Identities = 38/48 (79%), Positives = 44/48 (92%), Gaps = 0/48 (0%) Frame = -2 Query 137 LDEKQAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL 184 + ++ FYGP +RKMGGLGFIRLGVWQNF+RAWR+GYQGNMNGEGFIL Sbjct 1860161 MSLQKHFYGPLERKMGGLGFIRLGVWQNFMRAWRSGYQGNMNGEGFIL 1860018 Score = 38.5 bits (88), Expect(2) = 2e-21, Method: Compositional matrix adjust. Identities = 18/25 (72%), Positives = 20/25 (80%), Gaps = 0/25 (0%) Frame = -3 Query 198 LLEHREKEFGDKVSLESVLEAAKKV 222 LLEHREKEFG+KV VLEA KK+ Sbjct 1859899 LLEHREKEFGNKVDTADVLEAVKKI 1859825 Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats. Identities = 36/56 (64%), Positives = 44/56 (79%), Gaps = 1/56 (2%) Frame = -1 Query 8 FEGETLAMGMWSlglgavgaaiaglilaNTDFLLTKSAPATVDYLANADL-KTIDG 62 EG+ L MGMWSLGLGAVGAA+AG+ LANTD LTK+A AT+++L + DL T DG Sbjct 1861770 LEGDLLGMGMWSLGLGAVGAALAGIFLANTDLCLTKAANATLEHLEDTDLCSTTDG 1861603 > JXSJ01000933.1 Miichthys miiuy scaffold933, whole genome shotgun sequence Length=104782 Score = 75.9 bits (185), Expect(2) = 6e-20, Method: Compositional matrix adjust. Identities = 38/49 (78%), Positives = 45/49 (92%), Gaps = 1/49 (2%) Frame = +3 Query 93 EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFR-PHFAGEIFLDEK 140 +EA+ELSSLKPQLDELGVPL+AVVKE+VGTEIQDF+ +F GEIF+D K Sbjct 87906 QEAAELSSLKPQLDELGVPLHAVVKEDVGTEIQDFKLRYFNGEIFVDHK 88052 Score = 43.1 bits (100), Expect(2) = 6e-20, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (59%), Gaps = 1/51 (2%) Frame = +1 Query 135 IFLDEKQAFYGPQQRKMGGLGFIRLGVW-QNFVRAWRAGYQGNMNGEGFIL 184 + ++ FYGP+ R+MG + QN V A + GYQGN NGEGFIL Sbjct 88123 VLFASQRVFYGPKYRRMGLGLGLARLGVLQNLVYAHKKGYQGNRNGEGFIL 88275 Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 41/48 (85%), Positives = 47/48 (98%), Gaps = 0/48 (0%) Frame = +1 Query 93 EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK 140 +EA+ELSSLKPQLDELGVPLYAVVKE+VGTE+Q+FRP+F GEIFLDEK Sbjct 84733 QEAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPYFKGEIFLDEK 84876 Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 41/48 (85%), Positives = 47/48 (98%), Gaps = 0/48 (0%) Frame = +3 Query 93 EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK 140 +EA+ELSSLKPQLDELGVPLYAVVKE+VGTE+Q+FRP+F GEIFLDEK Sbjct 101664 QEAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPYFKGEIFLDEK 101807 Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats. Identities = 42/107 (39%), Positives = 53/107 (50%), Gaps = 33/107 (31%) Frame = +3 Query 37 TDFLLTKSAPATVDYLANADLKTIDG--------------------------------DE 64 TD LT AT+ +L A+LKT+ G + Sbjct 100854 TDMFLTPPLKATLKHLEEAELKTLKGGKTELFVKLVWVRWFTWNLFCI*SQLFCLVWSEM 101033 Query 65 RSLKAKALWEKSGAVIMAVRRPGXFLCREEASELSSLKPQLDELGVP 111 R LKAK+LWEKSGAVIMAVRRPG FLCRE S + ++ + EL +P Sbjct 101034 RILKAKSLWEKSGAVIMAVRRPG*FLCREVTS-IHTIHELVTELIIP 101171 Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats. Identities = 30/47 (64%), Positives = 36/47 (77%), Gaps = 1/47 (2%) Frame = +1 Query 65 RSLKAKALWEKSGAVIMAVRRPGXFLCREEASELSSLKPQLDELGVP 111 R LKAK+LWEKSGAVIMAVRRPG FLCRE S + ++ + EL +P Sbjct 84133 RILKAKSLWEKSGAVIMAVRRPG*FLCREVTS-IHTIHELVTELIIP 84270 Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/45 (56%), Positives = 37/45 (82%), Gaps = 0/45 (0%) Frame = +3 Query 140 KQAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL 184 ++ FYGP++RKMG L F+R+GVW N +RA++ G+ GN+ GEGF+L Sbjct 85086 QRRFYGPRERKMGLLAFLRVGVWMNGLRAFKNGFVGNVLGEGFVL 85220 Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/45 (56%), Positives = 37/45 (82%), Gaps = 0/45 (0%) Frame = +2 Query 140 KQAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL 184 ++ FYGP++RKMG L F+R+GVW N +RA++ G+ GN+ GEGF+L Sbjct 102017 QRRFYGPRERKMGLLAFLRVGVWMNGLRAFKNGFVGNVLGEGFVL 102151 Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats. Identities = 20/38 (53%), Positives = 27/38 (71%), Gaps = 0/38 (0%) Frame = +3 Query 62 GDERSLKAKALWEKSGAVIMAVRRPGXFLCREEASELS 99 D +++K + LWE++GAVI+ VRRPG LCRE LS Sbjct 86850 ADVKTVKGRTLWERNGAVILVVRRPG*ALCREVCVFLS 86963 Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 28/39 (72%), Gaps = 0/39 (0%) Frame = +3 Query 62 GDERSLKAKALWEKSGAVIMAVRRPGXFLCREEASELSS 100 D +++K + LWE++GAVI+ VRRPG LCRE LS+ Sbjct 103782 ADVKTVKGRTLWERNGAVILVVRRPG*ALCREVCVFLSA 103898 Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/26 (81%), Positives = 23/26 (88%), Gaps = 0/26 (0%) Frame = +3 Query 62 GDERSLKAKALWEKSGAVIMAVRRPG 87 + R LKAK+LWEKSGAVIMAVRRPG Sbjct 77805 SEMRILKAKSLWEKSGAVIMAVRRPG 77882 Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/25 (76%), Positives = 21/25 (84%), Gaps = 0/25 (0%) Frame = +3 Query 198 LLEHREKEFGDKVSLESVLEAAKKV 222 LLE REKEFGDK L S+LEAAKK+ Sbjct 88416 LLEQREKEFGDKADLSSILEAAKKI 88490 Lambda K H a alpha 0.319 0.137 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21804569728 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40