TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000648_2.0 # Protein # Selenoprotein S (SELENOS) # Zebrafish

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01001008.1 Miichthys miiuy scaffold1008, whole genome shotg...  50.1    3e-13


> JXSJ01001008.1 Miichthys miiuy scaffold1008, whole genome shotgun 
sequence
Length=91903

 Score = 50.1 bits (118),  Expect(2) = 3e-13, Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%), Gaps = 0/29 (0%)
 Frame = -2

Query  110    EEEKRRQKIEMWDSMQEGKSYKGSAKVAQ  138
              EEEKRRQKIE+W+SMQ+GKSYKG+AK  Q
Sbjct  77433  EEEKRRQKIEIWESMQQGKSYKGAAKPTQ  77347


 Score = 45.4 bits (106),  Expect(2) = 3e-13, Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 0/37 (0%)
 Frame = -3

Query  73     DVGSVVRRQEALEASRRRMQEEQDARAAEFREKQRML  109
              D   V R QEA++A+RRRMQEE DA+AA FREKQ+ +
Sbjct  77636  DAEVVARNQEAMDAARRRMQEELDAKAAIFREKQKQV  77526


 Score = 37.0 bits (84),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
 Frame = -1

Query  24     LQPSVTAFMSEYGWYLLFGCVGVYLLIQHLRK  55
              L  +V  F+S+YGWYL+     VYLLIQ+L K
Sbjct  77905  LLSTVGGFLSQYGWYLVVVTALVYLLIQYLNK  77810



Lambda      K        H        a         alpha
   0.312    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 15634421776


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40