Command line: [exonerate -m p2g --showtargetgff -q selenop2_zf.aa.fa.canviat -t genomeselenop2_JXSJ01000020.1.fa]
Hostname: [ws101073u]

C4 Alignment:
------------
         Query: SPP00000642_2.0 # Protein # Selenoprotein P (SELENOP) # Zebrafish 
        Target: JXSJ01000020.1:subseq(4028401,101980) Miichthys miiuy scaffold20, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 644
   Query range: 0 -> 182
  Target range: 49999 -> 51980

     1 : MetGlnAlaLeuTrpProLeuLeuLeuSerAlaPheProAlaLeuLeuGlyAlaSer<-> :    20
         |||!!.:!!|||!    !! !|||! !!!!|||.!.|||!.!|||||| !!||||||   
         MetHisSerLeuSerMetTrpLeuTyrThrAlaMetProGlyLeuLeuTrpAlaSerGln
 50000 : ATGCATTCTCTCTCAATGTGGCTGTACACGGCCATGCCAGGTCTGTTGTGGGCCTCGCAA : 50057

    21 : <->SerLeuPheValGluLysGluSerSerGlySerArgIleCysLysProAlaProGln :    38
            ||||||.!.||||||   !!:!:!..!!.!||||||||||||||||||||||||!!.
         AlaSerLeuLeuValGluGlyAspAsnAspAlaSerArgIleCysLysProAlaProHis
 50058 : GCCAGTCTACTAGTGGAGGGTGACAATGATGCCTCCAGGATCTGCAAACCCGCCCCCCAC : 50117

    39 : TrpGluIleAspGlyLysThrProMetLysGluLeuLeuGlyAsnValValValValAla :    58
         |||   ||| ! ||| ! .!!||||||  !||||||||||||||||||||||||||||||
         TrpThrIleLysGlyHisAlaProMetAlaGluLeuLeuGlyAsnValValValValAla
 50118 : TGGACCATAAAGGGACATGCACCCATGGCAGAGCTGCTGGGGAATGTGGTTGTGGTGGCG : 50177

    59 : LeuLeuLysAlaSerUnkHisPheCysLeuThrGlnAlaAla{Ar}  >>>> Target  :    73
         |||||||||||||||   !!.||||||||||||||||||:!!{!.}           102
         LeuLeuLysAlaSer***GlnPheCysLeuThrGlnAlaSer{As}++            
 50178 : CTACTCAAGGCCAGCTGACAGTTCTGTCTCACTCAGGCCTCT{AA}gt............ : 50226

    74 : Intron 1 >>>>  {g}LeuGlyAspLeuArgAspLysLeuAlaAsnGlyGlyLeuThr :    87
         5 bp           {!}||||||! !||||||! !||||||  !..!.!!..!:!!:!!
                      ++{n}LeuGlyGlyLeuArgAlaLysLeuAsnArgSerAsnMetSer
 50227 : .............ag{C}CTCGGAGGCTTGCGTGCCAAGCTGAACCGCAGCAACATGTCA : 51289

    88 : AsnIleSerPheMetValValAsnGluGlnAspSerGlnSerArgAlaMetTyrTrpGlu :   107
         .!.:!:|||||||||:!!|||||||||!:!|||:!!||||||||||||||||||||||||
         GluValSerPheMetIleValAsnGluArgAspAlaGlnSerArgAlaMetTyrTrpGlu
 51290 : GAGGTGTCCTTCATGATAGTAAATGAGCGAGATGCTCAGTCCAGAGCCATGTACTGGGAG : 51349

   108 : LeuLysArgArgThrAlaGlnAspIleProValTyrGlnGlnSerProLeuGlnAsnAsp :   127
         ||||||||||||.!! !!!  ! !|||||||||:!!||||||||||||!!!|||:!!|||
         LeuLysArgArgAlaProProGlyIleProValHisGlnGlnSerProPheGlnAspAsp
 51350 : CTGAAGAGGAGAGCACCCCCTGGTATTCCTGTGCACCAGCAGTCTCCCTTTCAAGATGAC : 51409

   128 : ValTrpGluIleLeuGluGlyAspLysAspAspPheLeuValTyrAsp{Ar}  >>>> T :   144
         |||||||||  !|||!!:||||||||||||||||||||||||||||||{||}        
         ValTrpGluAlaLeuAspGlyAspLysAspAspPheLeuValTyrAsp{Ar}++      
 51410 : GTGTGGGAGGCTTTGGATGGTGACAAGGATGACTTCTTGGTCTATGAT{AG}gt...... : 51464

   145 : arget Intron 2 >>>>  {g}CysGlyTyrLeuThrPheHisIleValLeuProPhe :   156
             404 bp           {|}||||||   ||||||||||||||||||||||||!:!
                            ++{g}CysGlyLeuLeuThrPheHisIleValLeuProTyr
 51465 : ...................ag{G}TGTGGTCTGCTCACCTTCCATATAGTGCTACCTTAC : 51900

   157 : SerPheLeuHisTyrProTyrIleGluAlaAlaIleArgAlaThrTyrHisLysAsnMet :   176
         |||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||:::
         SerPheLeuAsnTyrProTyrIleGluAlaAlaIleArgAlaThrTyrHisLysAsnIle
 51901 : AGTTTCCTGAACTACCCCTACATAGAGGCTGCAATCAGAGCCACTTAtcataaaaacatc : 51960

   177 : CysAsnCysSerLeuAsn :   182
         ||||||||||||:!!!::
         CysAsnCysSerValSer
 51961 : tgcaaTTGCTCTGTGAGt : 51980

vulgar: SPP00000642_2.0 0 182 . JXSJ01000020.1:subseq(4028401,101980) 49999 51980 + 644 M 19 57 G 0 6 M 53 159 S 0 2 5 0 2 I 0 1021 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 400 3 0 2 S 1 1 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	gene	50000	51980	644	+	.	gene_id 1 ; sequence SPP00000642_2.0 ; gene_orientation +
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	cds	50000	50223	.	+	.	
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	exon	50000	50223	.	+	.	insertions 6 ; deletions 0
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	splice5	50224	50225	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	intron	50224	51248	.	+	.	intron_id 1
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	splice3	51247	51248	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	cds	51249	51461	.	+	.	
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	exon	51249	51461	.	+	.	insertions 0 ; deletions 0
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	splice5	51462	51463	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	intron	51462	51865	.	+	.	intron_id 2
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	splice3	51864	51865	.	+	.	intron_id 1 ; splice_site "ag"
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	cds	51866	51980	.	+	.	
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	exon	51866	51980	.	+	.	insertions 0 ; deletions 0
JXSJ01000020.1:subseq(4028401,101980)	exonerate:protein2genome:local	similarity	50000	51980	644	+	.	alignment_id 1 ; Query SPP00000642_2.0 ; Align 50000 1 57 ; Align 50063 20 159 ; Align 51250 74 210 ; Align 51867 145 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis