TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000642_2.0 # Protein # Selenoprotein P (SELENOP) # Zebrafish

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000020.1 Miichthys miiuy scaffold20, whole genome shotgun...    112   3e-25
  JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun...  89.0    8e-18


> JXSJ01000020.1 Miichthys miiuy scaffold20, whole genome shotgun 
sequence
Length=4244138

 Score =   112 bits (280),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 55/88 (63%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
 Frame = +2

Query  59       LLKASXHFCLTQAARLGDLRDKLANGGLTNISFMVVNEQDSQSRAMYWELKRRTAQDIPV  118
                +L  S  FCL   + LG LR KL    ++ +SFM+VNE+D+QSRAMYWELKRR    IPV
Sbjct  4079609  ILTKSWCFCLFLCS-LGGLRAKLNRSNMSEVSFMIVNERDAQSRAMYWELKRRAPPGIPV  4079785

Query  119      YQQSPLQNDVWEILEGDKDDFLVYDRCG  146
                +QQSP Q+DVWE L+GDKDDFLVYDR G
Sbjct  4079786  HQQSPFQDDVWEALDGDKDDFLVYDR*G  4079869


 Score = 86.7 bits (213),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 47/75 (63%), Positives = 53/75 (71%), Gaps = 2/75 (3%)
 Frame = +3

Query  1        MQALWPLLLSAFPALLGAS--SLFVEKESSGSRICKPAPQWEIDGKTPMKELLGNVVVVA  58
                M +L   L +A P LL AS  SL VE ++  SRICKPAP W I G  PM ELLGNVVVVA
Sbjct  4078401  MHSLSMWLYTAMPGLLWASQASLLVEGDNDASRICKPAPHWTIKGHAPMAELLGNVVVVA  4078580

Query  59       LLKASXHFCLTQAAR  73
                LLKAS  FCLTQA++
Sbjct  4078581  LLKAS*QFCLTQASK  4078625


 Score = 78.6 bits (192),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 42/101 (42%), Positives = 57/101 (56%), Gaps = 10/101 (10%)
 Frame = +1

Query  92       MVVNEQDSQSRAMYWELKRRTAQDI----------PVYQQSPLQNDVWEILEGDKDDFLV  141
                 + +E     + MY+E+  +  Q I            Y +S  + D   ++         
Sbjct  4080079  FIFHEHAEIHKGMYFEIACQGVQQILESITI*FVYASYCESKKRVDEITVISV*ILILSF  4080258

Query  142      YDRCGYLTFHIVLPFSFLHYPYIEAAIRATYHKNMCNCSLN  182
                  RCG LTFHIVLP+SFL+YPYIEAAIRATYHKN+CNCS++
Sbjct  4080259  LSRCGLLTFHIVLPYSFLNYPYIEAAIRATYHKNICNCSVS  4080381


> JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun 
sequence
Length=3976164

 Score = 89.0 bits (219),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 34/141 (24%)
 Frame = +1

Query  72       ARLGDLRDKLANGGLTNISFMVVNEQDSQSRAMYWELKRRTAQDIPVYQQSPLQNDVWEI  131
                +R+  LR KL + GL  + +MVVN Q  QS+ ++  L +R  + I +Y+Q   Q DVW+ 
Sbjct  2363182  SRMDGLRQKLESQGLKGVVYMVVNHQGEQSQRLHTMLAQRLTEPITLYKQEEQQPDVWQT  2363361

Query  132      LEGDKDDFLVYD----------------------------------RCGYLTFHIVLPFS  157
                L G+KDDF +YD                                  RCG LT HI LP+S
Sbjct  2363362  LGGEKDDFFIYDRFVICGGQFFNI**E*SRGNIFILLTMLLYLFAYRCGRLTHHISLPYS  2363541

Query  158      FLHYPYIEAAIRATYHKNMCN  178
                 + + ++E+AI+ TY K +C 
Sbjct  2363542  IIGHGHVESAIKETYCKRICG  2363604


 Score = 42.7 bits (99),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/41 (49%), Positives = 26/41 (63%), Gaps = 0/41 (0%)
 Frame = +2

Query  33       CKPAPQWEIDGKTPMKELLGNVVVVALLKASXHFCLTQAAR  73
                C+  P W+I+   PM   +G V VVAL +AS  FCL QA+R
Sbjct  2362844  CQLPPAWKIEEVDPMNGAMGQVTVVALFQAS*LFCLVQASR  2362966



Lambda      K        H        a         alpha
   0.319    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 42368435708


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40