Command line: [exonerate -m p2g --showtargetgff -q selenop1_zf.aa.fa.canviat -t genomeselenop1_JXSJ01000024.1.fa]
Hostname: [ws101073u]

C4 Alignment:
------------
         Query: SPP00000643_2.0 # Protein # Selenoprotein P (SELENOP) # Zebrafish 
        Target: JXSJ01000024.1:subseq(2312841,100778) Miichthys miiuy scaffold24, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 545
   Query range: 0 -> 177
  Target range: 49921 -> 50778

     1 : MetTrpLysAlaLeuSerLeuThrLeuAlaLeuCysLeuLeuValGlyCysSerAlaGlu :    20
         ||||||  !..!|||||||||  !:!!.!!||||||||||||  !||| !!.!!||||||
         MetTrpAlaCysLeuSerLeuLeuIleThrLeuCysLeuLeuHisGlyGlyGlyAlaGlu
 49922 : ATGTGGGCGTGCCTCAGCCTGCTCATCACTCTCTGCCTGCTCCATGGGGGCGGTGCAGAG : 49979

    21 : SerGluThrGluGlyAlaArgCysLysLeuProProGluTrpLysValGlyAspValGlu :    40
         |||!!:  !!  ||| !!||||||:!!|||||||||!  ||||||:!!! !!!:|||!!:
         SerAspGlyGlyGlyProArgCysGlnLeuProProAlaTrpLysIleGluGluValAsp
 49980 : AGTGATGGGGGTGGGCCTCGCTGTCAGTTGCCACCAGCCTGGAAGATAGAGGAGGTGGAT : 50039

    41 : ProMetLysAsnAlaLeuGlyGlnValThrValValAlaTyrLeuGlnAlaSerUnkLeu :    60
         ||||||!!....|||:!!|||||||||||||||||||||  !!!!|||||||||   |||
         ProMetAsnGlyAlaMetGlyGlnValThrValValAlaLeuPheGlnAlaSer***Leu
 50040 : CCAATGAATGGGGCAATGGGCCAGGTGACAGTGGTGGCCCTTTTCCAGGCCAGCTGATTG : 50099

    61 : PheCysLeuGluGlnAlaSer{Ly}  >>>> Target Intron 1 >>>>  {s}Leu :    69
         |||||||||! !|||||||||{!:}            221 bp           {!}:!!
         PheCysLeuValGlnAlaSer{Ar}++                         ++{g}Met
 50100 : TTCTGTTTGGTGCAGGCTTCC{AG}gt.........................ag{A}ATG : 50347

    70 : AsnAspLeuLeuLeuLysLeuGluLysGlnGlyTyrProAsnIleAlaTyrMetValVal :    89
         :!!! !|||! !! !|||||||||!..||||||     !..!:!:!.!||||||||||||
         AspGlyLeuArgGlnLysLeuGluSerGlnGlyLeuLysGlyValValTyrMetValVal
 50348 : GATGGCCTGCGCCAGAAGTTGGAGAGTCAGGGTCTGAAGGGTGTGGTGTACATGGTCGTT : 50407

    90 : AsnAsnArgGluGluArgSerGlnArgLeuHisHisLeuLeuGlnGluArgLeuLeuAsn :   109
         |||:!!!:!! !|||!:!|||||||||||||||  !:!!|||  !:!!||||||  !.!.
         AsnHisGlnGlyGluGlnSerGlnArgLeuHisThrMetLeuAlaGlnArgLeuThrGlu
 50408 : AACCACCAGGGGGAACAGTCACAACGCTTGCACACCATGCTGGCACAGAGACTTACCGAG : 50467

   110 : <->IleThrLeuTyrAlaGlnAspLeuSerGlnProAspAlaTrpGlnAlaValAsnAla :   128
            ||||||||||||  !|||!!:  !..!|||||||||!.!||||||.!!:!!......
         ProIleThrLeuTyrLysGlnGluGluGlnGlnProAspValTrpGlnThrLeuGlyGly
 50468 : CCCATCACCCTCTACAAACAGGAGGAGCAACAGCCTGATGTCTGGCAAACACTCggggga : 50527

   129 : GluLysAspAspIleLeuValTyrAsp{Ar}  >>>> Target Intron 2 >>>>   :   138
         ||||||||||||.!!!!!:!!||||||{||}            102 bp           
         GluLysAspAspPhePheIleTyrAsp{Ar}++                         ++
 50528 : gagaaagatgacTTTTTCATTTATGAC{AG}gt.........................ag : 50659

   139 : {g}CysGlyArgLeuThrTyrHisLeuSerLeuProTyrThrIleLeuIleHisProHis :   157
         {|}|||||||||||||||:!!|||:!!||||||||||||:!!|||:!!  !|||  !|||
         {g}CysGlyArgLeuThrHisHisIleSerLeuProTyrSerIleIleGlyHisGlyHis
 50660 : {G}TGTGGACGTCTCACTCACCACATATCACTTCCATACTCCATCATTGGACATGGCCAT : 50716

   158 : ValGluGluAlaIleLysHisThrTyrCysAspArgIleCysGlyGluCysSerLeuGlu :   177
         ||||||...|||||||||.!.||||||||| ! ||||||||||||||||||!!!! !|||
         ValGluSerAlaIleLysGluThrTyrCysLysArgIleCysGlyGluCysThrHisGlu
 50717 : GTGGAGAGTGCCATCAAAGAGACCTACTGCAAACGCATCTGTGGCGAGTGCACACATGAG : 50776

vulgar: SPP00000643_2.0 0 177 . JXSJ01000024.1:subseq(2312841,100778) 49921 50778 + 545 M 67 201 S 0 2 5 0 2 I 0 217 3 0 2 S 1 1 M 41 123 G 0 3 M 28 84 S 0 2 5 0 2 I 0 98 3 0 2 S 1 1 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	gene	49922	50778	545	+	.	gene_id 1 ; sequence SPP00000643_2.0 ; gene_orientation +
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	cds	49922	50124	.	+	.	
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	exon	49922	50124	.	+	.	insertions 0 ; deletions 0
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	splice5	50125	50126	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	intron	50125	50345	.	+	.	intron_id 1
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	splice3	50344	50345	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	cds	50346	50558	.	+	.	
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	exon	50346	50558	.	+	.	insertions 3 ; deletions 0
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	splice5	50559	50560	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	intron	50559	50660	.	+	.	intron_id 2
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	splice3	50659	50660	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	cds	50661	50778	.	+	.	
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	exon	50661	50778	.	+	.	insertions 0 ; deletions 0
JXSJ01000024.1:subseq(2312841,100778)	exonerate:protein2genome:local	similarity	49922	50778	545	+	.	alignment_id 1 ; Query SPP00000643_2.0 ; Align 49922 1 201 ; Align 50347 69 123 ; Align 50473 110 84 ; Align 50662 139 117
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis