TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000643_2.0 # Protein # Selenoprotein P (SELENOP) # Zebrafish

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun...    108   1e-23
  JXSJ01000020.1 Miichthys miiuy scaffold20, whole genome shotgun...  48.9    7e-05


> JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun 
sequence
Length=3976164

 Score =   108 bits (269),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 66/148 (45%), Positives = 83/148 (56%), Gaps = 35/148 (24%)
 Frame = +1

Query  65       QASKLNDLLLKLEKQGYPNIAYMVVNNREERSqrlhhllqerllN-ITLYAQDLSQPDAW  123
                  S+++ L  KLE QG   + YMVVN++ E+SQRLH +L +RL   ITLY Q+  QPD W
Sbjct  2363176  HLSRMDGLRQKLESQGLKGVVYMVVNHQGEQSQRLHTMLAQRLTEPITLYKQEEQQPDVW  2363355

Query  124      QAVNAEKDDILVYDR----------------------------------CGRLTYHLSLP  149
                Q +  EKDD  +YDR                                  CGRLT+H+SLP
Sbjct  2363356  QTLGGEKDDFFIYDRFVICGGQFFNI**E*SRGNIFILLTMLLYLFAYRCGRLTHHISLP  2363535

Query  150      YTILIHPHVEEAIKHTYCDRICGECSLE  177
                Y+I+ H HVE AIK TYC RICGEC+ E
Sbjct  2363536  YSIIGHGHVESAIKETYCKRICGECTHE  2363619


 Score = 63.2 bits (152),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 28/42 (67%), Positives = 34/42 (81%), Gaps = 0/42 (0%)
 Frame = +2

Query  27       RCKLPPEWKVGDVEPMKNALGQVTVVAYLQASXLFCLEQASK  68
                RC+LPP WK+ +V+PM  A+GQVTVVA  QAS LFCL QAS+
Sbjct  2362841  RCQLPPAWKIEEVDPMNGAMGQVTVVALFQAS*LFCLVQASR  2362966


> JXSJ01000020.1 Miichthys miiuy scaffold20, whole genome shotgun 
sequence
Length=4244138

 Score = 48.9 bits (115),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (57%), Gaps = 2/88 (2%)
 Frame = +2

Query  55       LQASXLFCLEQASKLNDLLLKLEKQGYPNIAYMVVNNREERSqrlhhllqerll-NITLY  113
                L  S  FCL   S L  L  KL +     +++M+VN R+ +S+ ++  L+ R    I ++
Sbjct  4079612  LTKSWCFCLFLCS-LGGLRAKLNRSNMSEVSFMIVNERDAQSRAMYWELKRRAPPGIPVH  4079788

Query  114      AQDLSQPDAWQAVNAEKDDILVYDRCGR  141
                 Q   Q D W+A++ +KDD LVYDR G+
Sbjct  4079789  QQSPFQDDVWEALDGDKDDFLVYDR*GK  4079872


 Score = 45.4 bits (106),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 20/42 (48%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +1

Query  137      DRCGRLTYHLSLPYTILIHPHVEEAIKHTYCDRICGECSLES  178
                 RCG LT+H+ LPY+ L +P++E AI+ TY   IC  CS+ +
Sbjct  4080262  SRCGLLTFHIVLPYSFLNYPYIEAAIRATYHKNIC-NCSVSN  4080384


 Score = 44.7 bits (104),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query  20       ESETEGAR-CKLPPEWKVGDVEPMKNALGQVTVVAYLQASXLFCLEQASK  68
                E + + +R CK  P W +    PM   LG V VVA L+AS  FCL QASK
Sbjct  4078476  EGDNDASRICKPAPHWTIKGHAPMAELLGNVVVVALLKAS*QFCLTQASK  4078625



Lambda      K        H        a         alpha
   0.313    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 50388102380


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40