Command line: [exonerate -m p2g --showtargetgff -q selenoo1_zf.aa.fa.canviat -t genomeselenoo1_JXSJ01000027.1.fa] Hostname: [ws116078U] C4 Alignment: ------------ Query: SPP00000640_2.0 # Protein # Selenoprotein O1 (SELENOO1) # Zebrafish Target: JXSJ01000027.1:subseq(151128,104823) Miichthys miiuy scaffold27, whole genome shotgun sequence Model: protein2genome:local Raw score: 2667 Query range: 0 -> 692 Target range: 49999 -> 54823 1 : MetAlaSerValGlySerArgLeuThrArgPheTyrIleSerArgProGlyValIleAla : 20 ||||||! !:!! !! !!|||||| !! !! !|||! !! !||||||:!! !||| MetAlaTyrLeuArgProArgLeuGlyLeuSerArgIlePheLeuProGlyMetSerAla 50000 : ATGGCTTATTTAAGACCTCGGCTGGGACTGTCACGTATCTTCCTCCCCGGTATGTCCGCG : 50057 21 : ArgArgPheLeuAlaHisAlaGlyMetAspAspMetGlyValSerLeuSerArgSerSer : 40 !|||.!!!!!..! !.!||||||||||||||||||:!!:!!:!!||||||||| !! ValArgLeuPheCysSerValGlyMetAspAspMetGlyLeuAlaValSerArgSerPro 50058 : GTCAGGCTCTTCTGTTCGGTCGGGATGGACGACATGGGTCTGGCTGTGAGTCGTTCCCCG : 50117 41 : LeuGluArgLeuGluPheAspAsnValAlaLeuLysLysLeuProLeuAspProSerThr : 60 ||||||||||||!!:||||||||||||!.!||||||||||||||||||||| !!||| ! LeuGluArgLeuAspPheAspAsnValValLeuLysLysLeuProLeuAspThrSerGlu 50118 : CTGGAGCGGCTCGACTTTGACAACGTCGTGCTTAAAAAACTTCCCCTGGACACCTCCGAG : 50177 61 : GluProGlyValArgGlnValArgGlySerCysPheSerArgValGlnProThrProLeu : 80 |||||||||||||||||||||!:!|||:!!|||||||||! !|||:!!||| !|||||| GluProGlyValArgGlnValLysGlyAlaCysPheSerLeuValLysProGlnProLeu 50178 : GAGCCCGGGGTGCGGCAGGTGAAGGGAGCGTGTTTCTCCCTGGTGAAGCCGCAGCCGCTG : 50237 81 : LysAsnProGluPheValAlaValSerAlaProAlaLeuAlaLeuLeuGlyLeuAspAla : 100 ||||||..!||||||||||||||| ! !|||||||||||||||||||||:!!!.! ValAsnProArgPheValAlaValSerHisGluAlaLeuAlaLeuLeuGlyLeuAsnGly 50238 : GTCAATCCCCGGTTCGTGGCTGTGTCCCATGAAGCCCTGGCGCTGCTGGGGCTCAACGGT : 50297 101 : GluGluValLeuLysAspProLeuGlyProGluTyrLeuSerGlySerLysValMetPro : 120 |||||||||:!!!!.||||||||||||||||||||||||||||||||||||||||||||| GluGluValMetAsnAspProLeuGlyProGluTyrLeuSerGlySerLysValMetPro 50298 : GAGGAGGTCATGAACGATCCGCTCGGACCGGAGTATCTCAGCGGATCCAAAGTTATGCCT : 50357 121 : GlySerGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyGlnPheAlaGlyGln : 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlySerGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyGlnPheAlaGlyGln 50358 : GGATCCGAGCCTGCTGCTCACTGCTACTGCGGACACCAGTTTGGACAGTTCGCCGGGCAG : 50417 141 : LeuGlyAspGlyAlaAlaCysTyrLeuGlyGluValLysAlaProAlaGlyGlnSerPro : 160 |||||||||||||||||||||||||||||||||||||||!.!||| !!|||!!...!||| LeuGlyAspGlyAlaAlaCysTyrLeuGlyGluValLysValProProGlyHisAspPro 50418 : CTGGGCGACGGGGCGGCATGCTACCTCGGGGAGGTGAAGGTGCCACCCGGCCACGATCCC : 50477 161 : GluLeuLeuArgGluAsnProThrGlyArgTrpGluIleGlnValLysGlyAlaGlyLeu : 180 |||! !||||||!!:||||||!:!|||||||||||||||||||||||||||||||||||| GluGlnLeuArgAspAsnProSerGlyArgTrpGluIleGlnValLysGlyAlaGlyLeu 50478 : GAGCAGCTGCGGGATAATCCGAGCGGTCGGTGGGAGATTCAGGTGAAAGGAGCTGGACTG : 50537 181 : ThrProTyrSer{Ar} >>>> Target Intron 1 >>>> {g}GlnAlaAspGly : 189 ||||||!:!|||{||} 143 bp {|}|||||||||||| ThrProPheSer{Ar}++ ++{g}GlnAlaAspGly 50538 : ACTCCTTTTTCC{AG}gt.........................ag{G}CAAGCTGATGGC : 50707 190 : ArgLysValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaValPheAlaLeu : 209 |||||||||||||||||||||||||||||||||||||||||||||!.!:!!||| !||| ArgLysValLeuArgSerSerIleArgGluPheLeuCysSerGluValMetPhePheLeu 50708 : CGTAAAGTCCTGCGTTCGAGTATAAGAGAGTTCCTGTGCAGCGAGGTGATGTTCTTCCTG : 50767 210 : GlyValProThrThrArgAlaGlySerValValThrSerAspSerArgValMetArgAsp : 229 |||:!!|||||||||||||||||||||:!!|||||||||||||||!:!|||!!:|||||| GlyIleProThrThrArgAlaGlySerIleValThrSerAspSerLysValIleArgAsp 50768 : GGTATTCCCACCACCAGAGCAGGCTCCATCGTGACCTCTGACAGCAAGGTCATACGAGAT : 50827 230 : IlePheTyrAspGlyAsnProArgMetGluArgCysSerValValLeuArgIleAlaPro : 249 :!:!:!|||..!|||:!!|||||| ||||||||||||||||||||||||||||||||| ValTyrTyrSerGlyHisProArgHisGluArgCysSerValValLeuArgIleAlaPro 50828 : GTGTACTACAGCGGGCATCCTCGCCACGAGAGATGCTCTGTGGTCCTCCGTATCGCTCCC : 50887 250 : SerPheIle{Ar} >>>> Target Intron 2 >>>> {g}PheGlySerPheGlu : 258 !!!|||:!!{||} 95 bp {|}||||||||||||||| ThrPheLeu{Ar}++ ++{g}PheGlySerPheGlu 50888 : ACCTTCCTC{AG}gt.........................ag{G}TTTGGGTCTTTTGAG : 51009 259 : IlePheLysArgAlaAspGluPheThrGlyArgGlnGlyProSerTyrGlyHisAspGlu : 278 |||||||||!:!|||||||||!:!|||||||||!::|||||||||! !|||!.!|||||| IlePheLysGlnAlaAspGluTyrThrGlyArgArgGlyProSerCysGlyArgAspGlu 51010 : ATCTTCAAGCAGGCCGACGAGTACACCGGCCGCCGCGGTCCCAGCTGTGGACGTGATGAG : 51069 279 : LeuArgThrGlnMetLeuGluTyrValIleGluAsnPheTyrProGluIleHisArgAsn : 298 :!!||| !||||||:!!!!:||||||||||||! |||||||||||||||!!.!:!||| IleArgGlyGlnMetMetAspTyrValIleGluMetPheTyrProGluIleGlnGlnAsn 51070 : ATCAGAGGACAGATGATGGATTATGTCATTGAGATGTTTTACCCCGAGATCCAGCAGAAT : 51129 299 : TyrProAspLeuThrGluArgAsnThrAlaPhePheLysGlu >>>> Target Intr : 313 ||||||||| !..!|||||||||..!|||||||||!:!||| 346 bp TyrProAspArgValGluArgAsnValAlaPhePheArgGlu++ 51130 : TACCCCGATAGGGTGGAGAGGAATGTGGCTTTCTTCAGAGAGgt................ : 51176 314 : on 3 >>>> ValThrValArgThrAlaArgLeuValAlaGlnTrpGlnCysValGlyP : 329 |||! !:!!|||||||||||||||||||||||||||||||||||||||| ++ValMetLeuArgThrAlaArgLeuValAlaGlnTrpGlnCysValGlyP 51177 : .........aggtgATGCTCCGTACGGCTCGACTCGTGGCTCAGTGGCAGTGTGTCGGTT : 51568 330 : heCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrLeuAspTyrG : 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| heCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrLeuAspTyrG 51569 : TCTGCCATGGAGTCCTGAACACAGACAACATGAGCATCCTGGGACTCACGCTGGATTATG : 51628 350 : lyProPheGlyPheMetAsp{Ar} >>>> Target Intron 4 >>>> {g}PheA : 358 |||||!:!||||||||||||{||} 116 bp {|}|||| lyProTyrGlyPheMetAsp{Ar}++ ++{g}PheA 51629 : GTCCATATGGCTTCATGGAC{AG}gt.........................ag{G}TTTG : 51771 359 : spProAspPheIleCysAsnAlaSerAspAsnSerGlyArgTyrSerTyrGlnAlaGlnP : 378 |||||||||||||||||||||||||||||||||||!.!|||||||||||||||||||||| spProAspPheIleCysAsnAlaSerAspAsnSerAlaArgTyrSerTyrGlnAlaGlnP 51772 : ATCCAGACTTCATTTGCAACGCCTCTGACAACTCCGCTCGATACTCCTACCAGGCCCAGC : 51831 379 : roAlaIleCysArgTrpAsnLeuAlaArgLeuAlaGluAlaLeuGluProAspLeuProP : 398 |||||||||||||||||||||||!.!!:!|||||||||||||||! |||!!:||||||| roAlaIleCysArgTrpAsnLeuValLysLeuAlaGluAlaLeuAlaProGluLeuProP 51832 : CAGCTATCTGCAGGTGGAACCTGGTGAAGCTGGCAGAGGCTCTCGCCCCAGAGCTGCCAC : 51891 399 : roAspArgAlaGluGlnValLeuAspGluTyrLeuProLeuTyrAsnAspPheTyrLeuS : 418 |||||||||||||| !.!:!!|||||||||:!! !!|||||||||! !|||||||||. roAspArgAlaGluAlaAlaIleAspGluTyrMetAlaLeuTyrAsnGlyPheTyrLeuG 51892 : CAGACCGTGCTGAAGCCGCCATTGATGAGTACATGGCTCTGTATAACGGCTTCTACCTAG : 51951 419 : erAsnMetArgLysLysLeuGlyLeuLeuArgLysGluGluProGluAspGluMetLeuI : 438 .!|||||||||||||||||||||||||||!:!|||! |||||||||||||||:!:|||| luAsnMetArgLysLysLeuGlyLeuLeuLysLysGlyGluProGluAspGluValLeuI 51952 : AGAATATGAGGAAGAAGCTGGGCTTGTTGAAGAAGGGCGAGCCTGAGGACGAGGTCCTGA : 52011 439 : leThrGluLeuMetGlnThrMetHisAsnThr{G} >>>> Target Intron 5 >> : 449 |||||||||||:!!||||||||||||||||||{|} 124 bp leThrGluLeuLeuGlnThrMetHisAsnThr{G}++ 52012 : TCACTGAGTTGTTGCAGACCATGCACAACACA{G}gt....................... : 52047 450 : >> {ly}AlaAspPheThrAsnThrPheArgSerLeuSerGlnIleSerCysProThrG : 467 {||}|||||||||||||||||||||||||||||||||||||||||||||||||||: ++{ly}AlaAspPheThrAsnThrPheArgSerLeuSerGlnIleSerCysProThrG 52048 : ..ag{GT}GCTGACTTCACCAACACCTTCCGCAGCTTGAGTCAGATTTCCTGTCCCACTG : 52222 468 : lnGluGluAlaGluAspGluSerGluThrIleLysGlnAlaThrGluLeuLeuLeuHisG : 487 !!! !|||!.!|||! ! !..!!!: !||||||:!!||||||!!:|||||||||.!.| luGlyGluGlyGluAlaGlyGluAspLeuIleLysLysAlaThrAspLeuLeuLeuGluG 52223 : AGGGAGAAGGCGAGGCAGGGGAGGACCTCATCAAGAAAGCCACAGACCTTCTGCTGGAGC : 52282 488 : lnSerAlaSerLeuGluGluLeuLysAlaAlaAsnArgProSerMetAspPro{Ar} > : 505 ||!!!||||||||||||||||||||||||||||||!:!! !!!!|||||||||{||} lnCysAlaSerLeuGluGluLeuLysAlaAlaAsnLysLeuThrMetAspPro{Ar}++ 52283 : AGTGTGCCTCCTTAGAGGAGCTCAAGGCTGCCAACAAACTCACAATGGATCCC{CG}gt. : 52340 506 : >>> Target Intron 6 >>>> {g}GluLeuAlaMetLeuValSerMetAlaGlnS : 516 1419 bp {|}|||||||||||||||:!!||||||||||||| ++{g}GluLeuAlaMetLeuLeuSerMetAlaGlnS 52341 : ........................ag{T}GAGCTGGCGATGCTCCTCTCCATGGCTCAAA : 53788 517 : erAsnProAlaLeuPheGlnMetIleSerAspArgGlyThrValSerArgGlnLeuGluA : 536 |||||||||||||||||||||||||||||||||||!.!|||:!!:!!|||||||||!!:| erAsnProAlaLeuPheGlnMetIleSerAspArgAlaThrIleAlaArgGlnLeuAspA 53789 : GCAATCCAGCGCTGTTCCAGATGATCTCAGACAGGGCAACAATTGCGAGGCAGTTAGACA : 53848 537 : rgLeuSerArgLeuLysGluLeuMetAspThrThrGluGluGlnLeuArgValLysHisT : 556 |||||!!!!:!||||||!!:||||||!!:|||!:::::|||:::|||:::..!||||||. rgLeuArgLysLeuLysAspLeuMetGluThrSerGlnGluGluLeuLysThrLysHisA 53849 : GACTCAGGAAACTGAAAGACCTGATGGAGACCAGccaggaggagctgaaaacCAAACATG : 53908 557 : hrGluHisTrpSerAspTrpIleGlnLysTyr{Ar} >>>> Target Intron 7 > : 567 !!|||.!.|||||| !!|||||| !:::|||{||} 264 bp laGluGluTrpSerHisTrpIleThrArgTyr{Ar}++ 53909 : CTGAGGAGTGGAGCCACTGGATCACACGCTAT{AG}gt...................... : 53945 568 : >>> {g}GlnArgLeuAlaArgGluCysGluSerGlyValAspValLysAspValGlnT : 585 {|}:!!|||||||||!:!||| |||.!! ! !||||||:!!! !|||||| ++{g}LysArgLeuAlaGlnGluLeuGluGlyGlnSerAspValGlnAlaValGlnG 53946 : ...ag{G}AAGCGTCTGGCTCAGGAGCTGGAAGGCCAGAGCGATGTGCAGGCCGtgcagg : 54259 586 : hrGluArgValArgValMetAsnAsnAsnAsnProHisValValLeuArgAsnTyrIleA : 605 ||||||||||||||||||:!!!:!!.!||||||!.!|||:!!|||||||||||||||| luGluArgValArgValMetAspSerThrAsnProArgValIleLeuArgAsnTyrIleA 54260 : aggagagggtgagggtgaTGGACAGCACTAACCCTCGTGTGATACTCAGGAACTACATTG : 54319 606 : laGlnAsnAlaIleAlaAlaAlaGluAsnGlyAspPheSerGlu >>>> Target In : 620 ||||||||||||||! !|||||||||! !||||||||||||||| 238 laGlnAsnAlaIleGluAlaAlaGluIleGlyAspPheSerGlu++ 54320 : CCCAGAATGCAATTGAGGCTGCTGAGATTGGAGACTTCTCTGAGgt.............. : 54366 621 : tron 8 >>>> ValGlnArgValLeuLysValLeuGluLysProPheSerValGlnGl : 635 bp ||||||||||||||||||||||||||||||||||||||| !||| ++ValGlnArgValLeuLysValLeuGluLysProPheSerSerGlnPr 54367 : ...........agGTCCAGCGGGTCCTCAAAGTTCTGGAGAAGCCTTTCTCTTCGCAGCC : 54647 636 : uGlyLeuGluGlnProGlyTrpMetGlyArgGlyGlyAlaAlaIleProGlyGluArgAs : 655 !|||||||||! !|||! !||| !|||!:!|||! !:!!||| !! !||||||||||| oGlyLeuGluLeuProValTrpAlaGlyLysGlyGluSerAlaGluArgGlyGluArgAs 54648 : AGGTCTTGAACTACCTGTGTGGGCGGGCAAAGGAGAGTCAGCTGAACGAGGGGAGAGGGA : 54707 656 : pGluThrGluGluGluGlySerAsn<->SerSerGlyAlaGlyAlaArgGlyLeuValPr : 674 |||| !||||||:!! !..!.!. :!!||| !:!! !||||||..!! !||||| pGluGlyGluGluGlnGlnGlnGluAlaAlaSerThrSerThrAlaArgAsnProValPr 54708 : CGAAGGAGAGGAACAACAGCAAGAGGCTGCGTCTACATCTACAGCCAGAAATCCTGTCCC : 54767 675 : oTyrAspSerLysProProValTrpAlaAsnGluIleCysValThrUnkSerSer : 692 ||||||||||||||||||| !||||||:!!||||||||||||||| |||||| oTyrAspSerLysProProSerTrpAlaHisGluIleCysValThr***SerSer 54768 : CTACGACAGCAAGCCTCCGTCTTGGGCCCATGAAATCTGTGTCACATGATCTTCG : 54823 vulgar: SPP00000640_2.0 0 692 . JXSJ01000027.1:subseq(151128,104823) 49999 54823 + 2667 M 184 552 S 0 2 5 0 2 I 0 139 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 59 177 5 0 2 I 0 342 3 0 2 M 43 129 S 0 2 5 0 2 I 0 112 3 0 2 S 1 1 M 92 276 S 0 1 5 0 2 I 0 120 3 0 2 S 1 2 M 55 165 S 0 2 5 0 2 I 0 1415 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 260 3 0 2 S 1 1 M 52 156 5 0 2 I 0 234 3 0 2 M 44 132 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-18 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local gene 50000 54823 2667 + . gene_id 1 ; sequence SPP00000640_2.0 ; gene_orientation + JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 50000 50553 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 50000 50553 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 50554 50555 . + . intron_id 1 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 50554 50696 . + . intron_id 1 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 50695 50696 . + . intron_id 0 ; splice_site "AG" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 50697 50900 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 50697 50900 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 50901 50902 . + . intron_id 2 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 50901 50995 . + . intron_id 2 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 50994 50995 . + . intron_id 1 ; splice_site "AG" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 50996 51173 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 50996 51173 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 51174 51175 . + . intron_id 3 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 51174 51519 . + . intron_id 3 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 51518 51519 . + . intron_id 2 ; splice_site "ag" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 51520 51650 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 51520 51650 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 51651 51652 . + . intron_id 4 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 51651 51766 . + . intron_id 4 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 51765 51766 . + . intron_id 3 ; splice_site "AG" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 51767 52044 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 51767 52044 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 52045 52046 . + . intron_id 5 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 52045 52168 . + . intron_id 5 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 52167 52168 . + . intron_id 4 ; splice_site "AG" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 52169 52337 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 52169 52337 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 52338 52339 . + . intron_id 6 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 52338 53756 . + . intron_id 6 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 53755 53756 . + . intron_id 5 ; splice_site "AG" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 53757 53942 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 53757 53942 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 53943 53944 . + . intron_id 7 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 53943 54206 . + . intron_id 7 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 54205 54206 . + . intron_id 6 ; splice_site "AG" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 54207 54363 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 54207 54363 . + . insertions 0 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice5 54364 54365 . + . intron_id 8 ; splice_site "GT" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local intron 54364 54601 . + . intron_id 8 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local splice3 54600 54601 . + . intron_id 7 ; splice_site "AG" JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local cds 54602 54823 . + . JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local exon 54602 54823 . + . insertions 3 ; deletions 0 JXSJ01000027.1:subseq(151128,104823) exonerate:protein2genome:local similarity 50000 54823 2667 + . alignment_id 1 ; Query SPP00000640_2.0 ; Align 50000 1 552 ; Align 50698 186 201 ; Align 50997 254 177 ; Align 51520 313 129 ; Align 51768 357 276 ; Align 52171 450 165 ; Align 53758 506 183 ; Align 54208 568 156 ; Align 54602 620 132 ; Align 54737 664 87 # --- END OF GFF DUMP --- # -- completed exonerate analysis