TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000640_2.0 # Protein # Selenoprotein O1 (SELENOO1) # Zebrafish Length=692 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000027.1 Miichthys miiuy scaffold27, whole genome shotgun... 266 4e-73 JXSJ01000232.1 Miichthys miiuy scaffold232, whole genome shotgu... 151 8e-58 JXSJ01000495.1 Miichthys miiuy scaffold495, whole genome shotgu... 48.5 1e-15 > JXSJ01000027.1 Miichthys miiuy scaffold27, whole genome shotgun sequence Length=3730981 Score = 266 bits (679), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 140/195 (72%), Positives = 155/195 (79%), Gaps = 0/195 (0%) Frame = +2 Query 1 MASVGSRLTRFYISRPGVIARRFLAHAGMDDMGVslsrsslerleFDNVALKKLPLDPST 60 MA + RL I PG+ A R GMDDMG+++SRS LERL+FDNV LKKLPLD S Sbjct 201128 MAYLRPRLGLSRIFLPGMSAVRLFCSVGMDDMGLAVSRSPLERLDFDNVVLKKLPLDTSE 201307 Query 61 EPGVRQVRGSCFSRVQPTPLKNPEFVAVSAPALALLGLDAEEVLKDPLGPEYLSGSKVMP 120 EPGVRQV+G+CFS V+P PL NP FVAVS ALALLGL+ EEV+ DPLGPEYLSGSKVMP Sbjct 201308 EPGVRQVKGACFSLVKPQPLVNPRFVAVSHEALALLGLNGEEVMNDPLGPEYLSGSKVMP 201487 Query 121 GSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLRENPTGRWEIQVKGAGL 180 GSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVK P G PE LR+NP+GRWEIQVKGAGL Sbjct 201488 GSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKVPPGHDPEQLRDNPSGRWEIQVKGAGL 201667 Query 181 TPYSRQADGRKVLRS 195 TP+SR V +S Sbjct 201668 TPFSRYKGVFIVFKS 201712 Score = 172 bits (436), Expect(2) = 1e-63, Method: Compositional matrix adjust. Identities = 78/94 (83%), Positives = 85/94 (90%), Gaps = 0/94 (0%) Frame = +3 Query 356 RFDPDFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPLYNDF 415 RFDPDFICNASDNS RYSYQAQPAICRWNL +LAEAL P+LPPDRAE +DEY+ LYN F Sbjct 202893 RFDPDFICNASDNSARYSYQAQPAICRWNLVKLAEALAPELPPDRAEAAIDEYMALYNGF 203072 Query 416 YLSNMRKKLGLLRKEEPEDEMLITELMQTMHNTG 449 YL NMRKKLGLL+K EPEDE+LITEL+QTMHNTG Sbjct 203073 YLENMRKKLGLLKKGEPEDEVLITELLQTMHNTG 203174 Score = 95.5 bits (236), Expect(2) = 1e-63, Method: Compositional matrix adjust. Identities = 42/46 (91%), Positives = 44/46 (96%), Gaps = 0/46 (0%) Frame = +1 Query 313 VTVRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDRFD 358 V +RTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGP+GFMDR D Sbjct 202648 VMLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRSD 202785 Score = 122 bits (306), Expect(2) = 4e-50, Method: Compositional matrix adjust. Identities = 55/71 (77%), Positives = 66/71 (93%), Gaps = 0/71 (0%) Frame = +1 Query 183 YSRQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCS 242 + RQADGRKVLRSSIREFLCSE +F LG+PTTRAGS+VTSDS+V+RD++Y G+PR ERCS Sbjct 201817 FYRQADGRKVLRSSIREFLCSEVMFFLGIPTTRAGSIVTSDSKVIRDVYYSGHPRHERCS 201996 Query 243 VVLRIAPSFIR 253 VVLRIAP+F+R Sbjct 201997 VVLRIAPTFLR 202029 Score = 100 bits (248), Expect(2) = 4e-50, Method: Compositional matrix adjust. Identities = 45/61 (74%), Positives = 53/61 (87%), Gaps = 0/61 (0%) Frame = +3 Query 253 RFGSFEIFKRADEFTGRQGPSYGHDELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKE 312 RFGSFEIFK+ADE+TGR+GPS G DE+R QM++YVIE FYPEI +NYPD ERN AFF+E Sbjct 202122 RFGSFEIFKQADEYTGRRGPSCGRDEIRGQMMDYVIEMFYPEIQQNYPDRVERNVAFFRE 202301 Query 313 V 313 V Sbjct 202302 V 202304 Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 47/84 (56%), Positives = 63/84 (75%), Gaps = 2/84 (2%) Frame = +1 Query 486 HQSASLEELKAANRPSMDP--RELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKEL 543 HQ ++ + P + P ELAML+SMAQSNPALFQMISDR T++RQL+RL +LK+L Sbjct 204820 HQCSAFSNMPIKIIPLVIPVDSELAMLLSMAQSNPALFQMISDRATIARQLDRLRKLKDL 204999 Query 544 MDTTEEQLRVKHTEHWSDWIQKYR 567 M+T++E+L+ KH E WS WI +YR Sbjct 205000 METSQEELKTKHAEEWSHWITRYR 205071 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/57 (74%), Positives = 48/57 (84%), Gaps = 0/57 (0%) Frame = +1 Query 449 GADFTNTFRSLSQISCPTQEEAEDESETIKQATELLLHQSASLEELKAANRPSMDPR 505 GADFTNTFRSLSQISCPT+ E E + IK+AT+LLL Q ASLEELKAAN+ +MDPR Sbjct 203296 GADFTNTFRSLSQISCPTEGEGEAGEDLIKKATDLLLEQCASLEELKAANKLTMDPR 203466 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/56 (70%), Positives = 46/56 (82%), Gaps = 0/56 (0%) Frame = +1 Query 566 YRQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEVQ 621 YR+RLA+E E DV+ VQ ERVRVM++ NP V+LRNYIAQNAI AAE GDFSEV+ Sbjct 205330 YRKRLAQELEGQSDVQAVQEERVRVMDSTNPRVILRNYIAQNAIEAAEIGDFSEVR 205497 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/75 (57%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Frame = +2 Query 619 EVQRVLKVLEKPFSVQEGLEQPGWMGRG-GAAIPGERDETEEEGSNSSGAGARGLVPYDS 677 +VQRVLKVLEKPFS Q GLE P W G+G A + E++ +S + AR VPYDS Sbjct 205727 QVQRVLKVLEKPFSSQPGLELPVWAGKGESAERGERDEGEEQQQEAASTSTARNPVPYDS 205906 Query 678 KPPVWANEICVTXSS 692 KPP WA+EICVT SS Sbjct 205907 KPPSWAHEICVT*SS 205951 > JXSJ01000232.1 Miichthys miiuy scaffold232, whole genome shotgun sequence Length=433991 Score = 151 bits (382), Expect(2) = 8e-58, Method: Compositional matrix adjust. Identities = 83/169 (49%), Positives = 102/169 (60%), Gaps = 30/169 (18%) Frame = -1 Query 177 GAGLTPYSRQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNP 236 G L+ R DGRKVLRSSIREFLCSEA+ ALG+P+TRA S+VTSD V RD G Sbjct 337400 GQTLSNLLRDGDGRKVLRSSIREFLCSEAMAALGIPSTRAASLVTSDLYVNRDPLNSGRR 337221 Query 237 RMERCSVVLRIAPSFI------------------------------RFGSFEIFKRADEF 266 ERCSVVLR+APSFI R GSFEIF D+F Sbjct 337220 IPERCSVVLRLAPSFIR*QTFQTVDGHSVISGEMCDILLCGSCLCFRIGSFEIFLGRDDF 337041 Query 267 TGRQGPSYGHDELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKEVTV 315 +G QGPS G ++R Q+L+YVIE FYP I + + + +RN AFF+EV++ Sbjct 337040 SGLQGPSAGRHDIRAQLLDYVIETFYPCIQKTHSNRKDRNMAFFREVSI 336894 Score = 97.1 bits (240), Expect(2) = 8e-58, Method: Compositional matrix adjust. Identities = 41/48 (85%), Positives = 46/48 (96%), Gaps = 0/48 (0%) Frame = -3 Query 310 FKEVTVRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDRF 357 + +V +RTA+LVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDR+ Sbjct 336792 YPQVMLRTAKLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDRY 336649 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/141 (62%), Positives = 104/141 (74%), Gaps = 12/141 (9%) Frame = -1 Query 46 FDNVALKKLPLDPSTEPGVRQVRGSCFSRVQP-TPLKNPEFVAVSAPALALLGLDAEEVL 104 F+N ALK+LP+D S EPG R V +CFSR++ PL P FV+ S ALALL L E+VL Sbjct 339077 FNNTALKRLPVDDSDEPGSRTVPAACFSRIRTLQPLPRPTFVSQSQSALALLDLTVEDVL 338898 Query 105 KDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLR 164 ++PLGPEYLSGS+++PGSEPAAHCY GHQFG FAGQLGDGA YLGEV++ Sbjct 338897 RNPLGPEYLSGSRLLPGSEPAAHCYSGHQFGLFAGQLGDGAVVYLGEVES---------- 338748 Query 165 ENPTGRWEIQVKGAGLTPYSR 185 GRWEIQVKGAG+TPYSR Sbjct 338747 -GTHGRWEIQVKGAGVTPYSR 338688 Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 59/94 (63%), Positives = 76/94 (81%), Gaps = 0/94 (0%) Frame = -1 Query 356 RFDPDFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPLYNDF 415 RFDPDF+CN SD GRYSY+AQP++CRWNLARLAEAL +L +A VLDE++P Y F Sbjct 336485 RFDPDFVCNTSDKRGRYSYRAQPSVCRWNLARLAEALGSELDAAQAGVVLDEFVPTYEAF 336306 Query 416 YLSNMRKKLGLLRKEEPEDEMLITELMQTMHNTG 449 YL+ MRKKLGL+R+E+ ED LI++L++ MH+TG Sbjct 336305 YLAIMRKKLGLVRREDAEDGELISDLLRLMHDTG 336204 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 3/77 (4%) Frame = -1 Query 567 RQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEVQRVLKV 626 R+RLAREC+ D+ ++ ER+ VMN+ NPHV+LRNYIAQNAI AAE GDFSEV R ++V Sbjct 334793 RRRLARECDGTKDLSLIKKERLSVMNSTNPHVILRNYIAQNAIQAAEKGDFSEV-RPIRV 334617 Query 627 LEKPFSVQEGLEQPGWM 643 PF + + G + Sbjct 334616 F--PFFFENSIGTSGSI 334572 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 55/76 (72%), Gaps = 0/76 (0%) Frame = -1 Query 506 ELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKELMDTTEEQLRVKHTEHWSDWIQK 565 ELAM++SMAQ+NP +F +++D VS+QLER+ RLKEL++T +E+L+ K + W W+ + Sbjct 335498 ELAMILSMAQTNPVMFGIVADTPDVSQQLERMGRLKELLETDQEELKKKQRDDWIRWVSR 335319 Query 566 YRQRLARECESGVDVK 581 YR +R + +D++ Sbjct 335318 YR*EKSRALQLTLDLQ 335271 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/67 (45%), Positives = 43/67 (64%), Gaps = 4/67 (6%) Frame = -3 Query 441 LMQTMHNT--GADFTNTFRSLSQISCPTQEEAEDESETIKQATELLLHQSASLEELKAAN 498 +M HN GADFTNTFR LS++ P + + E T+ +L+L Q A++EELK AN Sbjct 336054 VMVLYHNVFLGADFTNTFRLLSRVPWPV--DGDSERATVGPVVDLILEQCATIEELKVAN 335881 Query 499 RPSMDPR 505 +P+M+ R Sbjct 335880 KPTMEDR 335860 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/71 (41%), Positives = 37/71 (52%), Gaps = 23/71 (32%) Frame = -1 Query 619 EVQRVLKVLEKPFSVQEGLEQPGWMGRGGAAIPGERDETEEEGSNSSGAGARGLVPYDSK 678 +V RVLKVLEKP+S + GLE +GSN++ V YD K Sbjct 334175 QVNRVLKVLEKPYSDEFGLETL-------------------DGSNANEL----TVAYDRK 334065 Query 679 PPVWANEICVT 689 PPVWA +IC+T Sbjct 334064 PPVWAQKICIT 334032 > JXSJ01000495.1 Miichthys miiuy scaffold495, whole genome shotgun sequence Length=217947 Score = 48.5 bits (114), Expect(4) = 1e-15, Method: Compositional matrix adjust. Identities = 22/33 (67%), Positives = 26/33 (79%), Gaps = 0/33 (0%) Frame = -3 Query 185 RQADGRKVLRSSIREFLCSEAVFALGVPTTRAG 217 R DGR V+RSS+REFLCSEA+ L VPT+RA Sbjct 96970 RSGDGRAVIRSSVREFLCSEAMHFLHVPTSRAA 96872 Score = 34.3 bits (77), Expect(4) = 1e-15, Method: Compositional matrix adjust. Identities = 14/23 (61%), Positives = 16/23 (70%), Gaps = 0/23 (0%) Frame = -3 Query 111 EYLSGSKVMPGSEPAAHCYCGHQ 133 Y SG K++PGS P AH Y GHQ Sbjct 97405 HYASGGKLLPGSVPLAHRYGGHQ 97337 Score = 32.0 bits (71), Expect(4) = 1e-15, Method: Compositional matrix adjust. Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 0/20 (0%) Frame = -2 Query 132 HQFGQFAGQLGDGAACYLGE 151 HQFG +AGQLGDG A LG+ Sbjct 97262 HQFGYWAGQLGDGRAHSLGQ 97203 Score = 30.8 bits (68), Expect(4) = 1e-15, Method: Compositional matrix adjust. Identities = 11/15 (73%), Positives = 14/15 (93%), Gaps = 0/15 (0%) Frame = -1 Query 171 WEIQVKGAGLTPYSR 185 WE+Q+KG+G TPYSR Sbjct 97092 WELQLKGSGKTPYSR 97048 Score = 59.3 bits (142), Expect(2) = 2e-13, Method: Compositional matrix adjust. Identities = 30/80 (38%), Positives = 38/80 (48%), Gaps = 28/80 (35%) Frame = -1 Query 308 AFFKEVTVRTARLVAQWQCVGFCHG----------------------------VLNTDNM 339 F+ V TA L+AQW VGF HG V NTDN Sbjct 95886 VFYSTVVNETAHLIAQWMSVGFGHGEHLICLNIYHSLYQHPLISTAFIIITTGVCNTDNF 95707 Query 340 SILGLTLDYGPFGFMDRFDP 359 S+L +T+DYGPFGFM+ ++P Sbjct 95706 SLLSITIDYGPFGFMESYNP 95647 Score = 39.7 bits (91), Expect(2) = 2e-13, Method: Compositional matrix adjust. Identities = 19/52 (37%), Positives = 30/52 (58%), Gaps = 0/52 (0%) Frame = -3 Query 360 DFICNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPL 411 DF+ N SD+ GRYS AQ + +NL +L AL P L + ++ + ++ L Sbjct 95554 DFVPNTSDDEGRYSIGAQANVGLFNLEKLLTALSPVLTKKQQKEYEEHFILL 95399 Lambda K H a alpha 0.318 0.134 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 115974169440 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40