TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000639_2.0 # Protein # Selenoprotein N (SELENON) # Zebrafish Length=557 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun... 190 4e-49 JXSJ01000641.1 Miichthys miiuy scaffold641, whole genome shotgu... 33.5 8.4 > JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun sequence Length=4019889 Score = 190 bits (482), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 92/146 (63%), Positives = 104/146 (71%), Gaps = 31/146 (21%) Frame = +2 Query 145 LGVSHSSLSGLRSWKRPAISSSTFYASQFKVFLPPSGKSAVGDTWWIIPSELNIFTGYLP 204 L VSHSSLSGLRSWK PA+ SS+F ASQF+ FLPP K VGDTWW+IPSELNIFTGYLP Sbjct 1516022 LQVSHSSLSGLRSWKSPAVPSSSFSASQFRAFLPPKNKVDVGDTWWVIPSELNIFTGYLP 1516201 Query 205 NNRFHPPTPRGK-------------------------------EVLIHSLLSMFHPRPFV 233 NNR+HPP+P+G +VLIHSLL+MFHPRPF+ Sbjct 1516202 NNRYHPPSPKGNKEVPLKTHHCLESH*VE**SDCILIDVLLSLQVLIHSLLNMFHPRPFI 1516381 Query 234 KSRFAPQGAVACIRATSDFYYDIVFR 259 KSRFAPQG VACIRA++DFYYDIVFR Sbjct 1516382 KSRFAPQGTVACIRASNDFYYDIVFR 1516459 Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/127 (57%), Positives = 84/127 (66%), Gaps = 27/127 (21%) Frame = +1 Query 332 QMELGAEGPSTPSVIYDEQGNMIDSRGEGGEPIQFVFEEIVWSEELKREEASRRLEVTMY 391 Q+EL + GPSTPSVI DE+GN+IDSR EPIQFVFE+I W+ EL ++EA+RRL+VT Y Sbjct 1517590 QLELQSTGPSTPSVIMDEEGNIIDSRDGSREPIQFVFEDIHWTSELSQQEATRRLDVTFY 1517769 Query 392 PFKKV---------------------------PYLPFSEAFSRASAEKKLVHSILLWGAL 424 PFK+V YLPFSEAF RA AE KLVHSILLWGAL Sbjct 1517770 PFKRVNVNEAFLRHAVALSQLFHCSHCAPSQVSYLPFSEAFERAEAENKLVHSILLWGAL 1517949 Query 425 DDQSCXG 431 DDQSC G Sbjct 1517950 DDQSC*G 1517970 Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/124 (56%), Positives = 79/124 (64%), Gaps = 31/124 (25%) Frame = +1 Query 55 LDIQFVKRH-EAGLKALGADGLFFFSSLDTDHDLYLSPEEFKPIAEKLTG---------- 103 L + V H E ++ LGA+GLF FSSLDTDHD YLSPEEFKPIAEKLTG Sbjct 1515313 LLLTLVSLH*EESIRTLGAEGLFLFSSLDTDHDNYLSPEEFKPIAEKLTGTSLYLSCRMT 1515492 Query 104 --------------------VAPPPEYEEEIPHDPNGETLTLHAKMQPLLLESMTKSKDG 143 + PP ++EEE+ HDPNGETLTL AKMQPLLL+SMTKSKDG Sbjct 1515493 HLINACLFSSH*NSALALAGITPPVDFEEEVTHDPNGETLTLEAKMQPLLLDSMTKSKDG 1515672 Query 144 FLGV 147 FLGV Sbjct 1515673 FLGV 1515684 Score = 75.1 bits (183), Expect(2) = 1e-24, Method: Compositional matrix adjust. Identities = 36/43 (84%), Positives = 41/43 (95%), Gaps = 0/43 (0%) Frame = +3 Query 431 GSGRTLRETVLESSPVLALLNQSFISSWSLVKELEDLQGDVKN 473 GSGRTLRETVLESSPVLALLNQSFISSWSLVKELE++Q + ++ Sbjct 1518579 GSGRTLRETVLESSPVLALLNQSFISSWSLVKELENMQVNCQD 1518707 Score = 61.6 bits (148), Expect(2) = 1e-24, Method: Compositional matrix adjust. Identities = 27/37 (73%), Positives = 31/37 (84%), Gaps = 0/37 (0%) Frame = +2 Query 468 QGDVKNLELSEKARLHLEKYTFPVQMMVVLPNGTVVH 504 Q D +N ELSEKARLHLE Y FPV+MMV LPNGT+V+ Sbjct 1518782 QADEQNRELSEKARLHLESYNFPVEMMVALPNGTIVN 1518892 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 41/47 (87%), Positives = 44/47 (94%), Gaps = 0/47 (0%) Frame = +3 Query 259 RIHAEFQLNDVPDFPFWFTPGQFAGHIILSKDASHVRDFHIYVPNDK 305 RIHAEFQLNDVPDFPFWFTPGQF G+IILSKDASHVR F +YVPND+ Sbjct 1517106 RIHAEFQLNDVPDFPFWFTPGQFTGNIILSKDASHVRHFQLYVPNDR 1517246 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/53 (83%), Positives = 47/53 (89%), Gaps = 0/53 (0%) Frame = +3 Query 503 VHHINANNFLDQTSMKPEDEGPGLSFSAGFEDPSTSTYIRFLQEGLEKAKPYL 555 VHHINAN FLDQTSMKPE+EG SFS+GFEDPSTSTYI FL+EGLEKAK YL Sbjct 1519161 VHHINANYFLDQTSMKPEEEGATFSFSSGFEDPSTSTYISFLKEGLEKAKEYL 1519319 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/69 (51%), Positives = 44/69 (64%), Gaps = 2/69 (3%) Frame = +2 Query 269 VPDFPFWFTPGQFAGHIILSKDASHVRDFH-IYVPND-KTLNVDMEWLYGASETSNMEVD 326 P FP Q H + S + F + VP+ ++LNVDMEWLYGASE+SNMEVD Sbjct 1517210 CPTFPTLRPQ*QVRPHTLHSARCRQLLQFFALNVPSCLRSLNVDMEWLYGASESSNMEVD 1517389 Query 327 IGYLPQMEL 335 IGYLPQ++L Sbjct 1517390 IGYLPQVQL 1517416 Score = 40.0 bits (92), Expect = 0.075, Method: Compositional matrix adjust. Identities = 24/65 (37%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = +3 Query 1 MATDVDK--TPAGEQKDDHEDRGTPssrrgrsrFTQISSLFIIAAIPVISFCIKYYLDIQ 58 MA DVDK T G + + +P S S + +L ++ A+P+++F IKYY D Q Sbjct 1514451 MAADVDKKNTEDGSRITPQSEHRSPGSGSWIS--KGLWTLLVVGAVPLLAFGIKYYQDAQ 1514624 Query 59 FVKRH 63 +KRH Sbjct 1514625 LLKRH 1514639 > JXSJ01000641.1 Miichthys miiuy scaffold641, whole genome shotgun sequence Length=166595 Score = 33.5 bits (75), Expect = 8.4, Method: Compositional matrix adjust. Identities = 24/101 (24%), Positives = 46/101 (46%), Gaps = 19/101 (19%) Frame = -2 Query 403 EAFSRASAEKKLVHSILLWGALDDQSCXGSGRTLRETVLESSPVLALLNQSFISSWSLVK 462 +F+R S K++HS++ AL C G+ LR T+ + L ++ + F+ L K Sbjct 43333 SSFARLSCRFKILHSVICAYALLSNQCHGANLQLRHTIFK----LLMVCRQFVGFSRLAK 43166 Query 463 ELEDLQGDVKNLELSEKARLHLEKY----TFPVQMMVVLPN 499 + L+E LH+ K +F + + +++ N Sbjct 43165 -----------MSLTESLHLHINKQLTAGSFILCL*IIIHN 43076 Lambda K H a alpha 0.318 0.136 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 88631076188 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40