TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000638_2.0 # Protein # Selenoprotein M (SELENOM) # Zebrafish

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000037.1 Miichthys miiuy scaffold37, whole genome shotgun...  74.3    2e-14
  JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun...  40.4    0.002
  JXSJ01000120.1 Miichthys miiuy scaffold120, whole genome shotgu...  30.8    4.8  
  JXSJ01000233.1 Miichthys miiuy scaffold233, whole genome shotgu...  30.4    5.6  
  JXSJ01000022.1 Miichthys miiuy scaffold22, whole genome shotgun...  30.0    8.9  


> JXSJ01000037.1 Miichthys miiuy scaffold37, whole genome shotgun 
sequence
Length=2858176

 Score = 74.3 bits (181),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = -2

Query  81       RIPLSEMTRAEINKLLAELGFYKKDHPEDQVPEEFRFSPAKDSPFE  126
                RI LS+MTR+EIN+LL +LGFYKK   ED+VPEEFRFSPAKDSPF+
Sbjct  1022460  RIALSDMTRSEINELLEKLGFYKKAQAEDEVPEEFRFSPAKDSPFK  1022323


 Score = 57.8 bits (138),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 27/28 (96%), Positives = 27/28 (96%), Gaps = 0/28 (0%)
 Frame = -3

Query  53       LYHNLVMKHIPGADPELVLLNHYYEELD  80
                L HNLVMKHIPGADPELVLLNHYYEELD
Sbjct  1023680  LSHNLVMKHIPGADPELVLLNHYYEELD  1023597


 Score = 30.0 bits (66),  Expect = 8.2, Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (67%), Gaps = 0/30 (0%)
 Frame = -3

Query  1        LIFTALLPSVILTYEVNIEKLSGLARARVE  30
                LI  A L      Y+V+++KL GLA+ARVE
Sbjct  1024868  LIVLASLLQCASAYDVDLKKLDGLAKARVE  1024779


> JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun 
sequence
Length=3976164

 Score = 40.4 bits (93),  Expect = 0.002, Method: Composition-based stats.
 Identities = 17/40 (43%), Positives = 26/40 (65%), Gaps = 0/40 (0%)
 Frame = +3

Query  82       IPLSEMTRAEINKLLAELGFYKKDHPEDQVPEEFRFSPAK  121
                +P+ +M   EI+ LL  LGFYK+    ++VPEEF+  P +
Sbjct  1416612  VPVKKMKADEISSLLDSLGFYKRSQKGEEVPEEFQHFPLR  1416731


> JXSJ01000120.1 Miichthys miiuy scaffold120, whole genome shotgun 
sequence
Length=812315

 Score = 30.8 bits (68),  Expect = 4.8, Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (2%)
 Frame = -1

Query  55     HNLVMKHIPGADPELVLLNHYYEELDRIPLSEMTRAEINKLLAELGFYKKDHPEDQ  110
               +L+M HI GA  E +    Y+E ++ + +S+ +R  +   L ++  YK+D  E+Q
Sbjct  24581  QSLLMLHI-GAIREALPYPKYFELMNNVNISQKSRDMMQAFLYDVPGYKRDKGENQ  24417


> JXSJ01000233.1 Miichthys miiuy scaffold233, whole genome shotgun 
sequence
Length=432333

 Score = 30.4 bits (67),  Expect = 5.6, Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
 Frame = -3

Query  51      IPLYHNLVMKHIPGADPELVLLNHYYEELDRIP  83
               +  +H LV+K++   +P+L L+ H++ +L+  P
Sbjct  303871  VMFFHRLVLKNLTAQNPQLNLIQHFWNQLEL*P  303773


> JXSJ01000022.1 Miichthys miiuy scaffold22, whole genome shotgun 
sequence
Length=3996094

 Score = 30.0 bits (66),  Expect = 8.9, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 5/45 (11%)
 Frame = +1

Query  55       HNLVMKHIPGADPELVLLNHYYEELDR-----IPLSEMTRAEINK  94
                HN +M+H+ G D  L  +NH YE + +     + + +MT  + NK
Sbjct  3065377  HNEIMQHV*GHDKNLNPVNHKYERISKGTANIVLVRQMTAVKNNK  3065511



Lambda      K        H        a         alpha
   0.320    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5144790100


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40