Command line: [exonerate -m p2g --showtargetgff -q selenok_zf.aa.fa.canviat -t genomeselenok_JXSJ01000005.1.fa] Hostname: [ws101110u] C4 Alignment: ------------ Query: SPP00000633_2.0 # Protein # Selenoprotein K (SELENOK) # Zebrafish Target: JXSJ01000005.1:subseq(6741278,100095) Miichthys miiuy scaffold5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 351 Query range: 0 -> 94 Target range: 50684 -> 48962 1 : MetValTyrValSerAsn{G} >>>> Target Intron 1 >>>> {ly}GlnVal : 9 ||||||||||||||||||{|} 574 bp {||}|||||| MetValTyrValSerAsn{G}++ ++{ly}GlnVal 50684 : atggtgTACGTGTCTAAC{G}gt.........................ag{gt}cAGGTC : 50086 10 : LeuAspSerArgSerArgSerProTrpSerLeuSerPheLeuThrAspPhePheTrpGly : 29 ||||||||||||!!!!:!||||||||| !!||||||||||||..!|||.!!||||||||| LeuAspSerArgThrGlnSerProTrpArgLeuSerPheLeuValAspLeuPheTrpGly 50085 : CTGGACAGCAGGACCCAGTCACCATGGCGACTGTCCTTTCTGGTCGATCTCTTCTGGGGA : 50026 30 : AlaValGluPheIleGlyLeu{Ph} >>>> Target Intron 2 >>>> {e}Phe : 38 |||||||||||||||||||||{||} 316 bp {|}||| AlaValGluPheIleGlyLeu{Ph}++ ++{e}Phe 50025 : GCAGTGGAGTTTATCGGCCTG{TT}gt.........................ag{T}TTT : 49683 39 : GlnThrLeuValGlnProAspLeuSerLysAspGlyAsnAsnSerAlaSerSerArgPhe : 58 :!!|||:!!:!!!!.||||||:!!!!!|||:!!||| |||!!!!.!||||||!!!||| LysThrIleIleHisProAspMetThrLysAsnGly---AsnCysGlySerSerSerPhe 49682 : AAGACAATCATTCACCCGGACATGACAAAGAATGGA---AACTGTGGTTCATCAAGCTTT : 49626 59 : SerAspGlyArg{Gl} >>>> Target Intron 3 >>>> {y}ProProGlyPhe : 67 !!!|||||||||{||} 550 bp {|}||||||||| ! ThrAspGlyArg{Gl}++ ++{y}ProProGlyPro 49625 : ACTGATGGCAGA{GG}gt.........................ag{T}CCTCCTGGTCCC : 49049 68 : Pro<->GlyArgArgArgMetGlyArgIleAsnHisGlyAlaGlyProThrProProPro : 86 ||| |||||||||||||||||||||||||||||||||!.!||||||!.! !!|||||| ProGlyGlyArgArgArgMetGlyArgIleAsnHisGlyGlyGlyProAsnAlaProPro 49048 : CCTGGTGGCAGAAGACGAATGGGAAGAATAAACCATGGTGGAGGTCCCAATGCTCCACCA : 48989 87 : MetGlyGlyGlyGlyUnkGlyArg : 94 ||||||||||||||| |||||| MetGlyGlyGlyGly***GlyArg 48988 : atgggtggaggaggatgaggaagg : 48963 vulgar: SPP00000633_2.0 0 94 . JXSJ01000005.1:subseq(6741278,100095) 50684 48962 - 351 M 6 18 S 0 1 5 0 2 I 0 570 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 312 3 0 2 S 1 1 M 13 39 G 1 0 M 11 33 S 0 2 5 0 2 I 0 546 3 0 2 S 1 1 M 5 15 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-17 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local gene 48963 50684 351 - . gene_id 1 ; sequence SPP00000633_2.0 ; gene_orientation + JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local cds 50666 50684 . - . JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local exon 50666 50684 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local splice5 50664 50665 . - . intron_id 1 ; splice_site "GT" JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local intron 50092 50665 . - . intron_id 1 JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local splice3 50092 50093 . - . intron_id 0 ; splice_site "ag" JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local cds 50001 50091 . - . JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local exon 50001 50091 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local splice5 49999 50000 . - . intron_id 2 ; splice_site "GT" JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local intron 49685 50000 . - . intron_id 2 JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local splice3 49685 49686 . - . intron_id 1 ; splice_site "AG" JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local cds 49610 49684 . - . JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local exon 49610 49684 . - . insertions 0 ; deletions 1 JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local splice5 49608 49609 . - . intron_id 3 ; splice_site "GT" JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local intron 49060 49609 . - . intron_id 3 JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local splice3 49060 49061 . - . intron_id 2 ; splice_site "AG" JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local cds 48963 49059 . - . JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local exon 48963 49059 . - . insertions 3 ; deletions 0 JXSJ01000005.1:subseq(6741278,100095) exonerate:protein2genome:local similarity 48963 50684 351 - . alignment_id 1 ; Query SPP00000633_2.0 ; Align 50685 1 18 ; Align 50090 8 87 ; Align 49684 38 39 ; Align 49645 52 33 ; Align 49059 64 15 ; Align 49041 69 78 # --- END OF GFF DUMP --- # -- completed exonerate analysis