TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000633_2.0 # Protein # Selenoprotein K (SELENOK) # Zebrafish

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000005.1 Miichthys miiuy scaffold5, whole genome shotgun ...  57.0    7e-09


> JXSJ01000005.1 Miichthys miiuy scaffold5, whole genome shotgun 
sequence
Length=8875486

 Score = 57.0 bits (136),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 28/32 (88%), Gaps = 0/32 (0%)
 Frame = -2

Query  6        NGQVLDSRSRSPWSLSFLTDFFWGAVEFIGLF  37
                +GQVLDSR++SPW LSFL D FWGAVEFIGL 
Sbjct  6791373  SGQVLDSRTQSPWRLSFLVDLFWGAVEFIGLL  6791278



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5149982650


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40