TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000636_2.0 # Protein # Selenoprotein J1 (SELENOJ1) # Zebrafish Length=342 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000123.1 Miichthys miiuy scaffold123, whole genome shotgu... 96.3 3e-47 JXSJ01000086.1 Miichthys miiuy scaffold86, whole genome shotgun... 96.3 4e-20 > JXSJ01000123.1 Miichthys miiuy scaffold123, whole genome shotgun sequence Length=762124 Score = 96.3 bits (238), Expect(3) = 3e-47, Method: Compositional matrix adjust. Identities = 49/68 (72%), Positives = 56/68 (82%), Gaps = 1/68 (1%) Frame = -3 Query 145 TGCETDTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAARFL-EHF 203 TGCE D QIDG+ KLAPIVA YAGKP+MLEKVE+AVRVTQNND CVAETLAAAR + HF Sbjct 356570 TGCENDCQIDGIAKLAPIVAFYAGKPDMLEKVEQAVRVTQNNDECVAETLAAARSVCVHF 356391 Query 204 ILNGPDPK 211 ++ P+ Sbjct 356390 *ISDLKPQ 356367 Score = 69.3 bits (168), Expect(3) = 3e-47, Method: Composition-based stats. Identities = 29/34 (85%), Positives = 31/34 (91%), Gaps = 0/34 (0%) Frame = -2 Query 82 GLNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKGA 115 GLNV+D KQRT KFFGPGSEYDTPVNDPYRD+G Sbjct 356946 GLNVDDLKQRTLKFFGPGSEYDTPVNDPYRDRGG 356845 Score = 66.6 bits (161), Expect(3) = 3e-47, Method: Compositional matrix adjust. Identities = 29/32 (91%), Positives = 30/32 (94%), Gaps = 0/32 (0%) Frame = -1 Query 115 APRPQLPIEGPWRHASLKGFIKNVDAGKEETG 146 PRPQLPIEGPWRHASLK F+KNVDAGKEETG Sbjct 356743 GPRPQLPIEGPWRHASLKSFLKNVDAGKEETG 356648 Score = 113 bits (282), Expect(2) = 7e-46, Method: Compositional matrix adjust. Identities = 59/98 (60%), Positives = 61/98 (62%), Gaps = 31/98 (32%) Frame = -3 Query 80 CGGLNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKG------------------------- 114 C GLNV+D KQRT KFFGPGSEYDTPVNDPYRDKG Sbjct 363290 CPGLNVDDLKQRTLKFFGPGSEYDTPVNDPYRDKGGRKAIHLLCCF*RIKLFHLVRWAY* 363111 Query 115 ------APRPQLPIEGPWRHASLKGFIKNVDAGKEETG 146 P PQLPIEGPWRHASLK F+KNVDAGKEETG Sbjct 363110 LCCACPGPTPQLPIEGPWRHASLKSFLKNVDAGKEETG 362997 Score = 93.6 bits (231), Expect(2) = 7e-46, Method: Compositional matrix adjust. Identities = 45/54 (83%), Positives = 49/54 (91%), Gaps = 0/54 (0%) Frame = -2 Query 145 TGCETDTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAAR 198 TGCE D QIDG+ KLAPIVA YAGKP+MLEK+E+AVRVTQNND CVAETLAAAR Sbjct 362919 TGCENDCQIDGIAKLAPIVAFYAGKPDMLEKMEQAVRVTQNNDECVAETLAAAR 362758 Score = 110 bits (276), Expect = 1e-24, Method: Composition-based stats. Identities = 57/109 (52%), Positives = 66/109 (61%), Gaps = 30/109 (28%) Frame = -2 Query 263 GLPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQV------------ 310 GLPGAFQAALHGVLTA YEQA+RD MSCGGCTCSR SFIGAC+GAQV Sbjct 355716 GLPGAFQAALHGVLTAKQYEQAIRDNMSCGGCTCSRGSFIGACLGAQVCVLIVYLLYLIL 355537 Query 311 ------------------GLEGIPASWKSKTLRCNTLLDLSRKVVALQQ 341 G EGIPASW+SKTL + +L+ ++K+ Q Sbjct 355536 CLYCTFDL*NKLF*SSQIGFEGIPASWRSKTLCYDAVLEHAKKITKHHQ 355390 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/109 (52%), Positives = 66/109 (61%), Gaps = 30/109 (28%) Frame = -1 Query 263 GLPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQV------------ 310 GLPGAFQAALHGVLTA YEQA+RD MSCGGCTCSR SFIGAC+GAQV Sbjct 361663 GLPGAFQAALHGVLTAKQYEQAIRDNMSCGGCTCSRGSFIGACLGAQVCVLIVYLLYLIL 361484 Query 311 ------------------GLEGIPASWKSKTLRCNTLLDLSRKVVALQQ 341 G EGIPASW+SKTL + +L+ ++K+ Q Sbjct 361483 CLYCTFDL*NKLF*SSQIGFEGIPASWRSKTLCYDAVLEHAKKITKHHQ 361337 Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 43/59 (73%), Positives = 48/59 (81%), Gaps = 0/59 (0%) Frame = -3 Query 24 QPLHWVYDLSKLSVLLSQSPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QPL WV DL KL +LSQ P PEF ES NP+YRR TG+QSC+GDQAF+LLESLSECGG Sbjct 363713 QPLTWVCDLPKLHGVLSQHPNPEFHFESINPYYRRETGKQSCFGDQAFVLLESLSECGG 363537 Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 44/59 (75%), Positives = 47/59 (80%), Gaps = 0/59 (0%) Frame = -2 Query 24 QPLHWVYDLSKLSVLLSQSPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QPL WV DL KL +LSQ P PEF ES NPFYRR G+QSCYGDQAF+LLESLSECGG Sbjct 357501 QPLTWVCDLPKLHGVLSQHPNPEFCSESFNPFYRRQMGKQSCYGDQAFVLLESLSECGG 357325 Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 52/89 (58%), Gaps = 5/89 (6%) Frame = -2 Query 189 CVAETLAAARFLEHFILNGPDPKALDAVLKQLSDPERKNPQELDKAVIG-----HIHQVK 243 C +RFLE+FILNGPDPKALD+VL QL+DP+RK PQ+LDKAVIG H Q Sbjct 356184 CTCTFTDFSRFLEYFILNGPDPKALDSVLAQLNDPKRKQPQDLDKAVIGM*NLRHCFQFC 356005 Query 244 DNLNKKPKELIPAVFPNTXGLPGAFQAAL 272 +NL + + + LP FQ Sbjct 356004 ENLIS*IITMFVII*HDLLCLPD*FQGTF 355918 Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/41 (80%), Positives = 39/41 (95%), Gaps = 0/41 (0%) Frame = -2 Query 197 ARFLEHFILNGPDPKALDAVLKQLSDPERKNPQELDKAVIG 237 +RFLE+FILNGPDPKALD+VL QL+DP+RK PQ+LDKAVIG Sbjct 362301 SRFLEYFILNGPDPKALDSVLAQLNDPKRKQPQDLDKAVIG 362179 Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 21/28 (75%), Positives = 24/28 (86%), Gaps = 0/28 (0%) Frame = -1 Query 237 GHIHQVKDNLNKKPKELIPAVFPNTXGL 264 GHIHQVK+NL+K PKELIP VFPN G+ Sbjct 355927 GHIHQVKENLSKTPKELIPTVFPNA*GI 355844 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/27 (70%), Positives = 23/27 (85%), Gaps = 0/27 (0%) Frame = -2 Query 237 GHIHQVKDNLNKKPKELIPAVFPNTXG 263 GHIHQVK+NL+K P+ELIP VF N+ G Sbjct 361920 GHIHQVKENLSKTPQELIPTVFSNS*G 361840 > JXSJ01000086.1 Miichthys miiuy scaffold86, whole genome shotgun sequence Length=1304831 Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 42/69 (61%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Frame = +2 Query 24 QPLHWVYDLSKLSVLLSQ-SPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QP+HW+Y KL +LS P PEFRP+SANPFYRR TG+Q+CYGDQA++LLESLS+CGG Sbjct 959990 QPMHWIYSPDKLKEILSDLEPCPEFRPQSANPFYRRTTGEQTCYGDQAYVLLESLSQCGG 960169 Query 83 LNVEDFKQR 91 + +Q+ Sbjct 960170 SEIHPNRQK 960196 Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/47 (77%), Positives = 40/47 (85%), Gaps = 0/47 (0%) Frame = +2 Query 264 LPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQV 310 LPGAFQ ALHGVLT + ++AVRDTM CGGCT SR+SFIGAC GAQV Sbjct 963281 LPGAFQGALHGVLTLNQLDEAVRDTMRCGGCTASRASFIGACFGAQV 963421 Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/38 (79%), Positives = 35/38 (92%), Gaps = 0/38 (0%) Frame = +3 Query 199 FLEHFILNGPDPKALDAVLKQLSDPERKNPQELDKAVI 236 FL HFILNGPDP ALDAVL QL+DP+R+NPQ+LD+AVI Sbjct 961692 FL*HFILNGPDPNALDAVLAQLNDPKRQNPQDLDRAVI 961805 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 21/32 (66%), Positives = 27/32 (84%), Gaps = 0/32 (0%) Frame = +1 Query 115 APRPQLPIEGPWRHASLKGFIKNVDAGKEETG 146 +P+ LPI+GPWR+ SLK F +NVDAG+EETG Sbjct 961573 SPKAILPIDGPWRNGSLKTFFRNVDAGREETG 961668 Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 21/27 (78%), Gaps = 0/27 (0%) Frame = +2 Query 237 GHIHQVKDNLNKKPKELIPAVFPNTXG 263 HIHQVK+NL K ++LIPAVF NT G Sbjct 962705 AHIHQVKNNLAKTSQQLIPAVFTNT*G 962785 Lambda K H a alpha 0.317 0.134 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 45453515978 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40