TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000635_2.0 # Protein # Selenoprotein I (SELENOI) # Zebrafish Length=397 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun... 72.8 1e-40 JXSJ01000138.1 Miichthys miiuy scaffold138, whole genome shotgu... 68.2 9e-11 JXSJ01000742.1 Miichthys miiuy scaffold742, whole genome shotgu... 64.3 1e-09 JXSJ01000011.1 Miichthys miiuy scaffold11, whole genome shotgun... 33.9 3.9 > JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun sequence Length=3578529 Score = 72.8 bits (177), Expect(4) = 1e-40, Method: Compositional matrix adjust. Identities = 45/67 (67%), Positives = 56/67 (84%), Gaps = 2/67 (3%) Frame = -3 Query 241 KAYRNNTLKHSSLYEAllpffspvllfvlsTLWISFSPTNIVQKQPRIFYLMVGTAFSNV 300 + +R+NTLKHSSLYEA LPF SP LLF+LST+W+ +SP+NI++ QPR FYLMVGTAF+NV Sbjct 3504997 RGHRSNTLKHSSLYEAFLPFLSPFLLFILSTIWVVYSPSNILELQPRTFYLMVGTAFANV 3504818 Query 301 TCKLIVC 307 T VC Sbjct 3504817 TVS--VC 3504803 Score = 63.9 bits (154), Expect(4) = 1e-40, Method: Compositional matrix adjust. Identities = 47/79 (59%), Positives = 58/79 (73%), Gaps = 2/79 (3%) Frame = -1 Query 302 CKLIVCQMSNTRCKplsllllpmsivvllvisGTVQGGESLVLFIWTAVVLLTHIHYGVS 361 CKLIVCQMSNTRC+ LS LLLPM+ VVLL ++G V E+L+L++WTA V+L HIHYGVS Sbjct 3504720 CKLIVCQMSNTRCQALSWLLLPMTPVVLLAVTG-VFANETLLLYLWTAAVILAHIHYGVS 3504544 Query 362 VVK-QLSDHFNIFAFSLKK 379 VV+ + H N A K Sbjct 3504543 VVRTHIYRHENDNALGFKN 3504487 Score = 63.5 bits (153), Expect(4) = 1e-40, Method: Compositional matrix adjust. Identities = 31/44 (70%), Positives = 38/44 (86%), Gaps = 0/44 (0%) Frame = -3 Query 189 TISIVYIITAVVGVETWYKPVFLNIHYRDLFTVMIIGCLFVVTL 232 TIS+VY++TAVVGVETWY+P+ L+ YRDLFT MIIG L +VTL Sbjct 3505321 TISLVYLVTAVVGVETWYQPILLHFLYRDLFTFMIIGEL*LVTL 3505190 Score = 30.4 bits (67), Expect(4) = 1e-40, Method: Compositional matrix adjust. Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 0/17 (0%) Frame = -1 Query 225 GCLFVVTLPMSLYNVFK 241 C F VTLPMSLYNV K Sbjct 3505134 ACSFTVTLPMSLYNVLK 3505084 Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/89 (92%), Positives = 87/89 (98%), Gaps = 0/89 (0%) Frame = -2 Query 100 LDGVDGKQARRTNSSTPLGELFDHGLDSWACVFFVATVYSVFGRGETGvsvvtlyyllwv 159 +DGVDGKQARRTNSSTPLGELFDHGLDSWAC+FFVATVYS+FGRGE+GV V TLYY+LWV Sbjct 3506543 VDGVDGKQARRTNSSTPLGELFDHGLDSWACIFFVATVYSIFGRGESGVGVATLYYILWV 3506364 Query 160 vlFSFILSHWEKYNTGILFLPWGYDISQV 188 VLFSFILSHWEKYNTGILFLPWGYDISQV Sbjct 3506363 VLFSFILSHWEKYNTGILFLPWGYDISQV 3506277 Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/39 (79%), Positives = 34/39 (87%), Gaps = 0/39 (0%) Frame = -2 Query 39 KVLPTWLAPNLITFTGFMFLVLTFTMLSFFDFDFYASGE 77 + LPTWLAPNLITFTGFMFLVL F ML+F+DFDF ASG Sbjct 3509366 QFLPTWLAPNLITFTGFMFLVLNFLMLAFYDFDFTASGR 3509250 Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/36 (75%), Positives = 31/36 (86%), Gaps = 1/36 (3%) Frame = -2 Query 363 VKQLSDHFNIFAFSLKKPNSD-UQDEEKIGLKAAEV 397 V+QLS HFNI AFSLKKPNSD ++EE+IGLK AEV Sbjct 3504383 VQQLSGHFNILAFSLKKPNSD*QEEEERIGLKEAEV 3504276 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/28 (82%), Positives = 25/28 (89%), Gaps = 0/28 (0%) Frame = -3 Query 16 KYSAVDSNPLSIYVMHPFWNSVVKVLPT 43 +YSAVDSNPLS+YVMHPFWN VVKV T Sbjct 3509902 QYSAVDSNPLSVYVMHPFWNFVVKVRKT 3509819 Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/26 (81%), Positives = 23/26 (88%), Gaps = 0/26 (0%) Frame = -1 Query 75 SGEGHTHVPSWVWIAAGLFNFLAYTL 100 S GH HVPSWVW+AAG+FNFLAYTL Sbjct 3508560 SAAGHEHVPSWVWVAAGIFNFLAYTL 3508483 Score = 36.6 bits (83), Expect = 0.57, Method: Compositional matrix adjust. Identities = 16/23 (70%), Positives = 18/23 (78%), Gaps = 0/23 (0%) Frame = -3 Query 1 YHYVTQEQLSGFDKYKYSAVDSN 23 Y YVTQEQL+GFDKYK +D N Sbjct 3512380 YEYVTQEQLAGFDKYKV*LIDCN 3512312 > JXSJ01000138.1 Miichthys miiuy scaffold138, whole genome shotgun sequence Length=664662 Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 29/47 (62%), Positives = 36/47 (77%), Gaps = 0/47 (0%) Frame = +1 Query 81 HVPSWVWIAAGLFNFLAYTLDGVDGKQARRTNSSTPLGELFDHGLDS 127 PSW +I + L F+ +LD +DGKQARRTNSS+PLGELFDHG D+ Sbjct 633484 QAPSWAFIVSALGLFMYQSLDAIDGKQARRTNSSSPLGELFDHGCDA 633624 Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/65 (31%), Positives = 37/65 (57%), Gaps = 9/65 (14%) Frame = +3 Query 8 QLSGFDKYKYSAVDSN----PLSIYVMHPFWNSVVKVLPTWLAPNLITFTGFMFLVLTFT 63 QL +++KYSA + P IY WN +++ +PTW+APN +T G + +++ Sbjct 630780 QLKRLEEHKYSASGRSLFEPPCQIY-----WNWLIQQIPTWIAPNTLTIVGLVVNIISTV 630944 Query 64 MLSFF 68 +L ++ Sbjct 630945 VLVYY 630959 > JXSJ01000742.1 Miichthys miiuy scaffold742, whole genome shotgun sequence Length=139909 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 0/47 (0%) Frame = +1 Query 81 HVPSWVWIAAGLFNFLAYTLDGVDGKQARRTNSSTPLGELFDHGLDS 127 P W ++ + F+ +LD +DGKQARRTNSS+PLGELFDHG DS Sbjct 129697 QAPLWAYLLCAVGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDS 129837 Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust. Identities = 18/53 (34%), Positives = 29/53 (55%), Gaps = 1/53 (2%) Frame = +2 Query 16 KYSAVDSNPLSIYVMHPFWNSVVKVLPTWLAPNLITFTGFMFLVLTFTMLSFF 68 +YS+ + L +M +W +V +P W+APNLIT G V T +L ++ Sbjct 128744 RYSSAGRSLLEP-LMQRYWEWLVGRVPAWIAPNLITIIGLATNVFTTLVLVYY 128899 > JXSJ01000011.1 Miichthys miiuy scaffold11, whole genome shotgun sequence Length=5761119 Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (55%), Gaps = 7/51 (14%) Frame = -1 Query 162 FSFILSHWEKYNTGILFLPWGYDISQVTISIVYIITAVVGVETWYKPVFLN 212 FSF+L W FLP+GY S+V + ++ IT + VE PV+LN Sbjct 5390472 FSFLLLLWN-------FLPFGYRRSRVGLEVLSSITCLALVENSRVPVYLN 5390341 Lambda K H a alpha 0.326 0.139 0.446 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56350683820 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40