Command line: [exonerate -m p2g --showtargetgff -q selenoh_zf.aa.fa.canviat -t genomeselenoh_JXSJ01000003.1.fa]
Hostname: [ws101100u]

C4 Alignment:
------------
         Query: SPP00000634_2.0 # Protein # Selenoprotein H (SELENOH) # Zebrafish 
        Target: JXSJ01000003.1:subseq(9649972,98963) Miichthys miiuy scaffold3, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 315
   Query range: 4 -> 127
  Target range: 50869 -> 48962

     5 : GlyLysSerAlaArgLysArgLysAlaAspSerAspGluLysGluLysLeuAspAspAla :    24
         |||::: !!!.!! !||||||||||||!!:  !! !|||   |||||||||...      
         GlyArgArgGlyThrLysArgLysAlaGluValValGlu---GluLysLeuSerValGlu
 50869 : GGTCGTCGTGGGACGAAGCGTAAAGCGGAAGTCGTTGAG---GAGAAACTGTCcgtggag : 50815

    25 : LysLysGluLysLeuGluAspLysAspGluGluThrGlyLeuArgValValIleGluHis :    44
         :::   ...      |||   ||||||:!::!!  ! !!! !||||||||||||||||||
         GluAspArgGlyGluGluLysLysAspAspGlnGluArgGlnArgValValIleGluHis
 50814 : gaggacagaggagaggagaagaaggacgACCAGGAGAGACAAAGGGTGGTCATTGAACAC : 50755

    45 : {Cy}  >>>> Target Intron 1 >>>>  {s}LysSerUnkArgValTyrGlyArg :    53
         {||}            764 bp           {|}||||||   |||||||||||||||
         {Cy}++                         ++{s}LysSer***ArgValTyrGlyArg
 50754 : {TG}gt.........................ag{T}AAGAGCTGACGAGTGTATGGGCGT : 49964

    54 : AsnAlaValValValArgGluAlaLeuAlaAspSerHisProGluLeuLysValMetIle :    73
         ||||||! !!.!|||!:!...||||||  !! !:!!||||||! !|||!  |||:!::!!
         AsnAlaGluAlaValLysSerAlaLeuLeuAlaAlaHisProGlyLeuThrValValLeu
 49963 : AATGCCGAGGCGGTGAAATCTGCCCTCCTGGCTGCCCACCCCGGACTGACTGTGGTCCTC : 49904

    74 : AsnProHisAsnProArgArgAsnSerPheGluIleThrLeuMetAspGlyGluArg{A} :    93
         ||||||.!.!!.||||||||||||||||||||||||||||||:!!||||||!  !:!{!}
         AsnProGluLysProArgArgAsnSerPheGluIleThrLeuLeuAspGlyGlyLys{G}
 49903 : AACCCTGAAAAACCCCGCCGGAACAGCTTCGAGATCACTCTGCTGGATGGAGGCAAA{G} : 49844

    94 :   >>>> Target Intron 2 >>>>  {la}AspValLeuTrpSerGlyIleLysLys :   102
                     777 bp           { !}  !  !||||||!!!||||||||||||
         ++                         ++{lu}ThrSerLeuTrpThrGlyIleLysLys
 49843 : gt.........................ag{AA}ACTTCTCTGTGGACTGGAATAAAGAAG : 49040

   103 : GlyProProArgLysLeuLysPheProGluProAlaGluValValThrAlaLeuLysGln :   122
         |||||||||||||||||||||||||||:!!|||! !!  ||||||.!!||||||:!!:!!
         GlyProProArgLysLeuLysPheProGlnProAspValValValAlaAlaLeuGlnGlu
 49039 : GGTCCGCCTCGCAAGCTGAAATTTCCTCAACCTGATGTTGTAGTTGCTGCTCTACAGGAG : 48980

   123 : AlaLeuGluLysGlu :   127
         !.!|||:!!!!.|||
         ValLeuLysAsnGlu
 48979 : GTTCTGAAGAATGAG : 48963

vulgar: SPP00000634_2.0 4 127 . JXSJ01000003.1:subseq(9649972,98963) 50869 48962 - 315 M 13 39 G 1 0 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 S 0 1 5 0 2 I 0 773 3 0 2 S 1 2 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	gene	48963	50869	315	-	.	gene_id 1 ; sequence SPP00000634_2.0 ; gene_orientation +
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	cds	50751	50869	.	-	.	
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	exon	50751	50869	.	-	.	insertions 0 ; deletions 1
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	splice5	50749	50750	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	intron	49987	50750	.	-	.	intron_id 1
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	splice3	49987	49988	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	cds	49844	49986	.	-	.	
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	exon	49844	49986	.	-	.	insertions 0 ; deletions 0
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	splice5	49842	49843	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	intron	49067	49843	.	-	.	intron_id 2
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	splice3	49067	49068	.	-	.	intron_id 1 ; splice_site "AG"
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	cds	48963	49066	.	-	.	
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	exon	48963	49066	.	-	.	insertions 0 ; deletions 0
JXSJ01000003.1:subseq(9649972,98963)	exonerate:protein2genome:local	similarity	48963	50869	315	-	.	alignment_id 1 ; Query SPP00000634_2.0 ; Align 50870 5 39 ; Align 50831 19 78 ; Align 49986 46 141 ; Align 49065 94 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis