TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000634_2.0 # Protein # Selenoprotein H (SELENOH) # Zebrafish

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000003.1 Miichthys miiuy scaffold3, whole genome shotgun ...  70.1    6e-13


> JXSJ01000003.1 Miichthys miiuy scaffold3, whole genome shotgun 
sequence
Length=10388247

 Score = 70.1 bits (170),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (73%), Gaps = 0/55 (0%)
 Frame = -1

Query  41       VIEHCKSXRVYGRNAVVVREALADSHPELKVMINPHNPRRNSFEITLMDGERADV  95
                VI   KS RVYGRNA  V+ AL  +HP L V++NP  PRRNSFEITL+DG + ++
Sbjct  9699972  VISGSKS*RVYGRNAEAVKSALLAAHPGLTVVLNPEKPRRNSFEITLLDGGKGEI  9699808


 Score = 52.0 bits (123),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 22/32 (69%), Positives = 27/32 (84%), Gaps = 0/32 (0%)
 Frame = -1

Query  96       LWSGIKKGPPRKLKFPEPAEVVTALKQALEKE  127
                LW+GIKKGPPRKLKFP+P  VV AL++ L+ E
Sbjct  9699030  LWTGIKKGPPRKLKFPQPDVVVAALQEVLKNE  9698935



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5144790100


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40