Command line: [exonerate -m p2g --showtargetgff -q selenoe_zf.aa.fa.canviat -t genomeselenoe_JXSJ01000024.1.fa]
Hostname: [ws101100u]

C4 Alignment:
------------
         Query: SPP00000615_2.0 # Protein # Fish selenoprotein 15 (SELENOE) # Zebrafish 
        Target: JXSJ01000024.1:subseq(1365230,101519) Miichthys miiuy scaffold24, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 482
   Query range: 7 -> 138
  Target range: 49592 -> 51519

     8 : LeuLeuAlaLeuCysAlaThrGlyArgThrAlaGluAsnLeuSerGluSerThrThrAsp :    27
         |||:!!  !  !  !|||  !  !  !.!!|||..!:!!  !!:!.!...!|||:!!! !
         LeuValLeuThrLeuAlaLeuThrValAlaAlaSerAspThrAsnAsnAspThrSerVal
 49593 : TTGGTGCTCACTCTTGCCCTCACTGTTGCGGCATCAGACACTAACAACGACACATCGGTT : 49650

    28 : GlnAspLysLeuValIleAlaArgGlyLysLeuVal  >>>> Target Intron 1 > :    40
         :!!!!:|||||||||||||||||||||||||||:!!            317 bp      
         GluGluLysLeuValIleAlaArgGlyLysLeuLeu++                      
 49651 : GAAGAAAAGCTTGTTATAGCCAGAGGAAAACTGCTGgt...................... : 49691

    41 : >>>  AlaProSerValValGlyUnkSerIleLysLysMetProGluLeuTyrAsnPheL :    58
              ||||||||||||||||||   .!!|||||||||||||||||||||:!!:!!||||
            ++AlaProSerValValGly***GlyIleLysLysMetProGluLeuHisHisPheL
 49692 : ...agGCTCCTAGTGTGGTCGGATGAGGCATAAAGAAAATGCCTGAGCTCCATCATTTTC : 50060

    59 : euMetGluArgTrpAlaLeu{Ty}  >>>> Target Intron 2 >>>>  {r}HisA :    67
         ||||||||||||||||||||{||}            278 bp           {|}||||
         euMetGluArgTrpAlaLeu{Ty}++                         ++{r}HisA
 50061 : TCATGGAGCGCTGGGCTTTG{TA}gt.........................ag{C}CACA : 50365

    68 : snLeuGluTyrAspSerGlyGluAspLysAsnProArgLeuIlePheTyrAsnAspLysA :    87
         |||||||||||||||||..!|||!!:|||||||||||||||||||||||||||!!:||||
         snLeuGluTyrAspSerSerGluGluLysAsnProArgLeuIlePheTyrAsnGluLysA
 50366 : ACTTGGAGTATGATTCATCGGAGGAGAAGAATCCCCGTCTGATATTCTATAACGAAAAGG : 50425

    88 : spGluGluValLys  >>>> Target Intron 3 >>>>  ValValProValLysLy :    97
         |||||!  ||||||            939 bp           ..!||||||||||||||
         spGluValValLys++                         ++ThrValProValLysLy
 50426 : ACGAGGTTGTAAAGgt.........................agACTGTCCcagtgaagaa : 51394

    98 : sMetLysAlaAspGluIleSerSerLeuLeuAspSerLeuGlyPheTyrLysArgSerGl :   117
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!
         sMetLysAlaAspGluIleSerSerLeuLeuAspSerLeuGlyPheTyrLysArgSerGl
 51395 : aatgaaggcAGACGAGATCAGCAGCCTGTTAGACTCACTTGGTTTCTACAAGAGGTCCCA : 51454

   118 : uLysGlyGluGluValProGluGluPheLysHisPheProLeuArgAlaProArgAspGl :   137
         !|||||||||||||||||||||||||||:!!|||||||||||||||.!!|||||||||||
         nLysGlyGluGluValProGluGluPheGlnHisPheProLeuArgThrProArgAspGl
 51455 : GAAAGGGGAAGAGGTGCCAGAGGAGTTTCAGCATTTCCCCCTGCGCACCCCGAGGGACGA : 51514

   138 : uLeu :   138
         ||||
         uLeu
 51515 : GCTG : 51519

vulgar: SPP00000615_2.0 7 138 . JXSJ01000024.1:subseq(1365230,101519) 49592 51519 + 482 M 32 96 5 0 2 I 0 313 3 0 2 M 25 75 S 0 2 5 0 2 I 0 274 3 0 2 S 1 1 M 26 78 5 0 2 I 0 935 3 0 2 M 47 141
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	gene	49593	51519	482	+	.	gene_id 1 ; sequence SPP00000615_2.0 ; gene_orientation +
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	cds	49593	49688	.	+	.	
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	exon	49593	49688	.	+	.	insertions 0 ; deletions 0
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	splice5	49689	49690	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	intron	49689	50005	.	+	.	intron_id 1
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	splice3	50004	50005	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	cds	50006	50082	.	+	.	
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	exon	50006	50082	.	+	.	insertions 0 ; deletions 0
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	splice5	50083	50084	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	intron	50083	50360	.	+	.	intron_id 2
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	splice3	50359	50360	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	cds	50361	50439	.	+	.	
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	exon	50361	50439	.	+	.	insertions 0 ; deletions 0
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	splice5	50440	50441	.	+	.	intron_id 3 ; splice_site "GT"
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	intron	50440	51378	.	+	.	intron_id 3
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	splice3	51377	51378	.	+	.	intron_id 2 ; splice_site "AG"
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	cds	51379	51519	.	+	.	
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	exon	51379	51519	.	+	.	insertions 0 ; deletions 0
JXSJ01000024.1:subseq(1365230,101519)	exonerate:protein2genome:local	similarity	49593	51519	482	+	.	alignment_id 1 ; Query SPP00000615_2.0 ; Align 49593 8 96 ; Align 50006 40 75 ; Align 50362 66 78 ; Align 51379 92 141
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis