TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000615_2.0 # Protein # Fish selenoprotein 15 (SELENOE) #
Zebrafish

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun...  84.7    9e-18
  JXSJ01000037.1 Miichthys miiuy scaffold37, whole genome shotgun...  38.5    0.013


> JXSJ01000024.1 Miichthys miiuy scaffold24, whole genome shotgun 
sequence
Length=3976164

 Score = 84.7 bits (208),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 38/41 (93%), Positives = 40/41 (98%), Gaps = 0/41 (0%)
 Frame = +3

Query  98       MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAPRDEL  138
                MKADEISSLLDSLGFYKRS+KGEEVPEEF+HFPLR PRDEL
Sbjct  1416627  MKADEISSLLDSLGFYKRSQKGEEVPEEFQHFPLRTPRDEL  1416749


 Score = 49.3 bits (116),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 22/27 (81%), Positives = 24/27 (89%), Gaps = 0/27 (0%)
 Frame = +1

Query  38       LVAPSVVGUSIKKMPELYNFLMERWAL  64
                L APSVVG  IKKMPEL++FLMERWAL
Sbjct  1415230  LQAPSVVG*GIKKMPELHHFLMERWAL  1415310


 Score = 45.4 bits (106),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 7/43 (16%)
 Frame = +3

Query  49       KKMPELYNF-------LMERWALYHNLEYDSGEDKNPRLIFYN  84
                K+M  LY+F       L+  +   HNLEYDS E+KNPRLIFYN
Sbjct  1415520  KQMDVLYSFTVYLLFPLIRSFLCSHNLEYDSSEEKNPRLIFYN  1415648


> JXSJ01000037.1 Miichthys miiuy scaffold37, whole genome shotgun 
sequence
Length=2858176

 Score = 38.5 bits (88),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 17/35 (49%), Positives = 25/35 (71%), Gaps = 0/35 (0%)
 Frame = -2

Query  98       MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLR  132
                M   EI+ LL+ LGFYK+++  +EVPEEF+  P +
Sbjct  1022442  MTRSEINELLEKLGFYKKAQAEDEVPEEFRFSPAK  1022338



Lambda      K        H        a         alpha
   0.315    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 6378564154


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40