Command line: [exonerate -m p2g --showtargetgff -q selenbp1_hs.aa.fa.canviat -t genomeselenbp1_JXSJ01000048.1.fa] Hostname: [ws101183u] C4 Alignment: ------------ Query: SPP00002942_2.0 # Protein # selenium binding protein 1 (SELENBP1) # Human Target: JXSJ01000048.1:subseq(337018,104523) Miichthys miiuy scaffold48, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1157 Query range: 43 -> 350 Target range: 56110 -> 52175 44 : AlaThrLysCysGlyAsnCysGlyProGlyTyrSerThrProLeuGluAlaMetLys{G} : 63 ::: ...|||..!...||||||||||||||| !!!:!||||||||||||||||||{|} SerAspSerCysSerGlyCysGlyProGlyTyrArgSerProLeuGluAlaMetLys{G} 56110 : tcagataGTTGTTCAGGATGTGGACCAGGATACCGCAGCCCACTGGAGGCCATGAAG{G} : 56053 64 : >>>> Target Intron 1 >>>> {ly}ProArgGluGluIleValTyrLeuPro : 72 1536 bp {||}! !|||||||||||||||||||||||| ++ ++{ly}ArgArgGluGluIleValTyrLeuPro 56052 : gt.........................ag{gT}CGTCGGGAGGAGATCGTCTACCTGCCC : 54490 73 : CysIleTyrArgAsnThrGlyThrGluAlaProAspTyrLeuAlaThrValAspValAsp : 92 ||||||||||||||||||! !! ! !|||||||||||||||||||||||||||||| CysIleTyrArgAsnThrAspIleLeuLysProAspTyrLeuAlaThrValAspValAsp 54489 : TGTATCTACCGTAACACCGACATCCTTAAACCGGACTACCTCGCCACTGTTGACGTTGAC : 54430 93 : ProLysSerProGlnTyrCysGln >>>> Target Intron 2 >>>> ValIleH : 103 ||||||||| !! ||||||||| 186 bp ||||||| ProLysSerSerThrTyrCysGln++ ++ValIleH 54429 : CCGAAATCCTCCACCTACTGTCAGgt.........................agGTCATCC : 54211 104 : isArgLeuProMetProAsnLeuLysAspGluLeuHisHisSerGlyTrpAsnThrCysS : 123 |||||||||||||||||||||||:::|||||||||||||||||||||||||||...|||| isArgLeuProMetProAsnLeuArgAspGluLeuHisHisSerGlyTrpAsnAlaCysS 54210 : ACCGGCTGCCAATGCCGAACCTTCGTGACGAGCTGCATCACTCCGGCTGGAACGcatgca : 54151 124 : erSerCysPheGlyAspSerThrLysSerArgThrLysLeuValLeuProSerLeuIleS : 143 |||||||||||...|||:!!:!!|||!.!|||!.!:::|||:!!||||||:!!|||!!:| erSerCysPheSerAspAlaSerLysLysArgAsnArgLeuIleLeuProAlaLeuMetS 54150 : gcagctgcttcagcGATGCCTCCAAGAAGAGGAACCGTCTAATCTTGCCAGCGCTCATGT : 54091 144 : erSerArgIleTyrValValAspValGlySerGluProArgAlaProLysLeuHisLys : 163 |||||||||||||||||||||||||||||!!!.!.||||||||||||:!!:!!|||||| erSerArgIleTyrValValAspValGlyThrAsnProArgAlaProGlnIleHisLys+ 54090 : CGTCCAGAATCTACGTGGTTGATGTCGGGACAAACCCCCGAGCGCCGCAGATACACAAGg : 54031 164 : >>>> Target Intron 3 >>>> ValIleGluProLysAspIleHisAlaLysCy : 173 863 bp :!!:!!||||||! !!::!::!! !|||! + ++MetValGluProIleGluLeuTyrTrpLysSe 54030 : t.........................agATGGTCGAGCCCATCGAGCTGTACTGGAAGTC : 53138 174 : sGluLeuAlaPheLeuHisThrSerHisCysLeuAlaSerGlyGluValMetIleSerSe : 193 !! !|||||| !! !||||||||||||||||||!.!!:!|||:!!:!!|||||||||!! rGlyLeuAlaAsnProHisThrSerHisCysLeuGlyAsnGlyGlnIleMetIleSerCy 53137 : TGGACTGGCCAACCCACACACCTCCCACTGCCTGGGCAACGGACAGATCATGATCAGCTG : 53078 194 : rLeuGlyAspValLysGlyAsnGlyLys{G} >>>> Target Intron 4 >>>> : 203 !:!!|||||| ! ||||||..!|||{|} 214 bp sIleGlyAspProAlaGlyAsnAsnLys{G}++ ++ 53077 : CATCGGAGATCCAGCCGGCAACAACAAA{G}gt.........................ag : 52835 204 : {ly}GlyPheValLeuLeuAspGlyGluThrPheGluValLysGlyThrTrpGluArgPr : 222 {||}|||||||||||||||||||||||||||||||||||| |||!.!||||||!.!|| {ly}GlyPheValLeuLeuAspGlyGluThrPheGluValValGlyAsnTrpGluHisPr 52834 : {GT}GGCTTCGTCCTGCTGGATGGCGAGACGTTTGAGGTGGTCGGTAACTGGGAGCACCC : 52777 223 : oGlyGlyAlaAlaProLeuGlyTyrAspPheTrpTyrGlnProArgHisAsnValMetIl : 242 ||||! !|||||||||!!!||||||||||||||||||||||||||||||||||||||||| oGlyGluAlaAlaProPheGlyTyrAspPheTrpTyrGlnProArgHisAsnValMetIl 52776 : GGGCGAAGCGGCGCCGTTTGGATATGACTTCTGGTACCAACCTCGACACAACGTGATGAT : 52717 243 : eSerThrGluTrpAlaAlaProAsnValLeuArgAspGlyPheAsnProAlaAspValGl : 262 ||||!:!||||||!.!||||||!!.!.!||| !|||||||||||||||||| !!||||| eSerSerGluTrpGlyAlaProLysAlaLeuValAspGlyPheAsnProAlaHisValGl 52716 : CAGCAGCGAGTGGGGAGCGCCCAAAGCTCTGGTGGACGGGTTCAATCCAGCACACGTCGA : 52657 263 : uAla{G} >>>> Target Intron 5 >>>> {ly}LeuTyrGlySerHisLeuTy : 271 |! !{|} 124 bp {||}|||||||||!!! !|||:! uGlu{G}++ ++{ly}LeuTyrGlyThrSerLeuHi 52656 : AGAA{G}gt.........................ag{GT}CTGTATGGCACCTCCCTTCA : 52506 272 : rValTrpAspTrpGlnArgHisGluIleValGlnThrLeuSerLeu<->LysAspGlyLe : 290 !|||||||||||| ! !|||..!! :!!|||:!!||| !||| :!!!!:||| sValTrpAspTrpThrThrHisArgLysLeuGlnSerLeuHisLeuGlyGluGluGlyAl 52505 : TGTTTGGGACTGGACCACACACAGGAAGCTGCAGTCGCTCCACCTTGGGGAAGAGGGCGC : 52446 291 : uIleProLeuGluIleArgPheLeuHisAsnProAspAlaAlaGlnGlyPheValGlyCy : 310 !||||||||||||:!!||||||||||||:!!|||||||||.!!:!!|||!:!|||||||| aIleProLeuGluValArgPheLeuHisAspProAspAlaThrGluGlyTyrValGlyCy 52445 : TATTCCTCTGGAGGTCCGATTCCTCCACGACCCCGATGCCACCGAGGGCTACGTGGGATG : 52386 311 : sAlaLeuSerSerThrIleGlnArgPheTyrLysAsnGlu >>>> Target Intron : 324 |||||||.!!.!!|||:!: ||||||||||||!.. ! 88 bp sAlaLeuGlyGlyThrValPheArgPheTyrLysThrPro++ 52385 : TGCTCTGGGAGGAACTGTGTTCAGGTTCTACAAGACACCGgt.................. : 52342 325 : 6 >>>> GlyGlyThrTrpSerValGluLysValIleGlnValProProLysLysVal : 340 ||| !|||:!!!.!||||||||||||!!.|||||| !||||||||| ++GluGlyAspTrpAlaAlaGluLysValIleHisValProAsnLysLysVal 52341 : .......aggaagGTGACTGGGCTGCAGAGAAGGTGATCCATGTCCCCAATAAGAAGGTC : 52208 341 : LysGlyTrpLeuLeuProGluMetProGly : 350 :!!|||||| !|||||||||||||||||| GluGlyTrpAlaLeuProGluMetProGly 52207 : GAAGGATGGGCGCTGCCTGAGATGCCCggt : 52176 vulgar: SPP00002942_2.0 43 350 . JXSJ01000048.1:subseq(337018,104523) 56110 52175 - 1157 M 19 57 S 0 1 5 0 2 I 0 1532 3 0 2 S 1 2 M 37 111 5 0 2 I 0 182 3 0 2 M 62 186 5 0 2 I 0 859 3 0 2 M 40 120 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 60 180 S 0 1 5 0 2 I 0 120 3 0 2 S 1 2 M 22 66 G 0 3 M 37 111 5 0 2 I 0 84 3 0 2 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local gene 52176 56110 1157 - . gene_id 1 ; sequence SPP00002942_2.0 ; gene_orientation + JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 56053 56110 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 56053 56110 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice5 56051 56052 . - . intron_id 1 ; splice_site "GT" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local intron 54517 56052 . - . intron_id 1 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice3 54517 54518 . - . intron_id 0 ; splice_site "ag" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 54404 54516 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 54404 54516 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice5 54402 54403 . - . intron_id 2 ; splice_site "GT" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local intron 54218 54403 . - . intron_id 2 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice3 54218 54219 . - . intron_id 1 ; splice_site "AG" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 54032 54217 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 54032 54217 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice5 54030 54031 . - . intron_id 3 ; splice_site "GT" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local intron 53169 54031 . - . intron_id 3 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice3 53169 53170 . - . intron_id 2 ; splice_site "AG" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 53048 53168 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 53048 53168 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice5 53046 53047 . - . intron_id 4 ; splice_site "GT" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local intron 52834 53047 . - . intron_id 4 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice3 52834 52835 . - . intron_id 3 ; splice_site "AG" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 52651 52833 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 52651 52833 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice5 52649 52650 . - . intron_id 5 ; splice_site "GT" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local intron 52527 52650 . - . intron_id 5 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice3 52527 52528 . - . intron_id 4 ; splice_site "AG" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 52345 52526 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 52345 52526 . - . insertions 3 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice5 52343 52344 . - . intron_id 6 ; splice_site "GT" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local intron 52257 52344 . - . intron_id 6 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice3 52257 52258 . - . intron_id 5 ; splice_site "ag" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 52176 52256 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 52176 52256 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local similarity 52176 56110 1157 - . alignment_id 1 ; Query SPP00002942_2.0 ; Align 56111 44 57 ; Align 54515 64 111 ; Align 54218 101 186 ; Align 53169 163 120 ; Align 52832 204 180 ; Align 52525 265 66 ; Align 52456 287 111 ; Align 52257 324 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002942_2.0 # Protein # selenium binding protein 1 (SELENBP1) # Human Target: JXSJ01000048.1:subseq(337018,104523) Miichthys miiuy scaffold48, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 426 Query range: 418 -> 514 Target range: 50502 -> 49999 419 : ValValLysGlyLysArgValAlaGlyGlyProGlnMetIleGlnLeuSerLeuAspGly : 438 ||| :::|||!:!|||||| !!|||||||||||||||:!!|||||||||||||||||| ValCysGlnGlyArgArgValProGlyGlyProGlnMetLeuGlnLeuSerLeuAspGly 50502 : gtctgtcaggggAGGCGTGTCCCTGGTGGTCCTCAGATGTTACAGTTGAGTTTGGACGGT : 50445 439 : LysArgLeuTyrIleThrThrSerLeuTyrSerAlaTrpAspLysGlnPheTyrProAsp : 458 |||||||||:!:||||||||||||||||||!.!|||||||||||||||||||||||| LeuArgLeuTyrValThrThrSerLeuTyrSerGlyTrpAspLysGlnPheTyrProAsp 50444 : CTCAGACTTTATGTGACGACATCTCTGTACAGCGGCTGGGACAAACAGTTCTACCCTGAC : 50385 459 : LeuIle{Ar} >>>> Target Intron 1 >>>> {g}GluGlySerValMetLeu : 467 :!!|||{||} 215 bp {|}|||||||||||||||:!! MetIle{Ar}++ ++{g}GluGlySerValMetMet 50384 : ATGATC{CG}gt.........................ag{a}gaggGTTCAGTGATGATG : 50143 468 : GlnValAspValAspThrValLysGlyGlyLeuLysLeuAsnProAsnPheLeuValAsp : 487 |||:!!|||||||||:!!|||||||||||||||! |||||| !||||||||||||||| GlnIleAspValAspSerValLysGlyGlyLeuThrLeuAsnGluAsnPheLeuValAsp 50142 : CAGATCGATGTGGACTCTGTTAAAGGGGGTTTGACCCTGAATGAAAACTTCCTGGTGGAT : 50083 488 : PheGlyLysGluProLeuGlyProAlaLeuAlaHisGluLeuArgTyrProGlyGlyAsp : 507 ||||||||||||||| !||||||!.!||||||||||||:!!|||||||||||||||||| PheGlyLysGluProGlyGlyProValLeuAlaHisGluValArgTyrProGlyGlyAsp 50082 : TTCGGTAAAGAACCCGGCGGTCCAGTTCTGGCCCATGAGGTCCGGTATCCTGGTGGAGAC : 50023 508 : CysSerSerAspIleTrpIle : 514 |||!!!||||||||||||::: CysThrSerAspIleTrpLeu 50022 : TGCACGTCCGACATCTGGctg : 50000 vulgar: SPP00002942_2.0 418 514 . JXSJ01000048.1:subseq(337018,104523) 50502 49999 - 426 M 42 126 S 0 2 5 0 2 I 0 211 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local gene 50000 50502 426 - . gene_id 2 ; sequence SPP00002942_2.0 ; gene_orientation + JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 50375 50502 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 50375 50502 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice5 50373 50374 . - . intron_id 1 ; splice_site "GT" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local intron 50160 50374 . - . intron_id 1 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local splice3 50160 50161 . - . intron_id 0 ; splice_site "ag" JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local cds 50000 50159 . - . JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local exon 50000 50159 . - . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(337018,104523) exonerate:protein2genome:local similarity 50000 50502 426 - . alignment_id 2 ; Query SPP00002942_2.0 ; Align 50503 419 126 ; Align 50159 462 159 # --- END OF GFF DUMP --- # -- completed exonerate analysis