TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00002942_2.0 # Protein # selenium binding protein 1 (SELENBP1) #
Human

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000048.1 Miichthys miiuy scaffold48, whole genome shotgun...    109   4e-48


> JXSJ01000048.1 Miichthys miiuy scaffold48, whole genome shotgun 
sequence
Length=2380189

 Score =   109 bits (272),  Expect(3) = 4e-48, Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 51/63 (81%), Gaps = 0/63 (0%)
 Frame = -3

Query  202     KGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADV  261
                GGFVLLDGETFEV G WE PG AAP GYDFWYQPRHNVMIS+EW AP  L DGFNPA V
Sbjct  389855  SGGFVLLDGETFEVVGNWEHPGEAAPFGYDFWYQPRHNVMISSEWGAPKALVDGFNPAHV  389676

Query  262     EAG  264
               E G
Sbjct  389675  EEG  389667


 Score = 82.8 bits (203),  Expect(3) = 4e-48, Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 48/61 (79%), Gaps = 1/61 (2%)
 Frame = -1

Query  263     AGLYGSHLYVWDWQRHEIVQTLSL-KDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYK  321
               +GLYG+ L+VWDW  H  +Q+L L ++G IPLE+RFLH+PDA +G+VGCAL  T+ RFYK
Sbjct  389548  SGLYGTSLHVWDWTTHRKLQSLHLGEEGAIPLEVRFLHDPDATEGYVGCALGGTVFRFYK  389369

Query  322     N  322
                
Sbjct  389368  T  389366


 Score = 43.5 bits (101),  Expect(3) = 4e-48, Method: Compositional matrix adjust.
 Identities = 19/28 (68%), Positives = 22/28 (79%), Gaps = 0/28 (0%)
 Frame = -2

Query  323     EGGTWSVEKVIQVPPKKVKGWLLPEMPG  350
               + G W+ EKVI VP KKV+GW LPEMPG
Sbjct  389277  QEGDWAAEKVIHVPNKKVEGWALPEMPG  389194


 Score =   115 bits (289),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 50/68 (74%), Positives = 60/68 (88%), Gaps = 0/68 (0%)
 Frame = -3

Query  96      PQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEP  155
               P   QVIHRLPMPNL+DELHHSGWN CSSCF D++K R +L+LP+L+SSRIYVVDVG+ P
Sbjct  391250  PPPSQVIHRLPMPNLRDELHHSGWNACSSCFSDASKKRNRLILPALMSSRIYVVDVGTNP  391071

Query  156     RAPKLHKV  163
               RAP++HKV
Sbjct  391070  RAPQIHKV  391047


 Score =   100 bits (248),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 44/56 (79%), Positives = 51/56 (91%), Gaps = 0/56 (0%)
 Frame = -3

Query  459     LIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI  514
               + REGSVM+Q+DVD+VKGGL LN NFLVDFGKEP GP LAHE+RYPGGDC+SDIW+
Sbjct  387185  VCREGSVMMQIDVDSVKGGLTLNENFLVDFGKEPGGPVLAHEVRYPGGDCTSDIWL  387018


 Score = 77.4 bits (189),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 39/44 (89%), Gaps = 0/44 (0%)
 Frame = -1

Query  419     VVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE  462
               V +G+RV GGPQM+QLSLDG RLY+TTSLYS WDKQFYPD+IR 
Sbjct  387520  VCQGRRVPGGPQMLQLSLDGLRLYVTTSLYSGWDKQFYPDMIRS  387389


 Score = 69.7 bits (169),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 34/41 (83%), Gaps = 0/41 (0%)
 Frame = -3

Query  61      MKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQV  101
               ++G REEIVYLPCIYRNT    PDYLATVDVDPKS  YCQV
Sbjct  391541  VEGRREEIVYLPCIYRNTDILKPDYLATVDVDPKSSTYCQV  391419


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 31/42 (74%), Gaps = 0/42 (0%)
 Frame = -2

Query  162     KVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG  203
               +++EP +++ K  LA  HTSHCL +G++MIS +GD  GN KG
Sbjct  390189  QMVEPIELYWKSGLANPHTSHCLGNGQIMISCIGDPAGNNKG  390064



Lambda      K        H        a         alpha
   0.319    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79996621538


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40