Command line: [exonerate -m p2g --showtargetgff -q sel15_zf.aa.fa.canviat -t genomesel15_JXSJ01000006.1.fa]
Hostname: [ws116064U]

C4 Alignment:
------------
         Query: SPP00000632_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Zebrafish 
        Target: JXSJ01000006.1:subseq(2230275,103608) Miichthys miiuy scaffold6, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 607
   Query range: 8 -> 146
  Target range: 53617 -> 49999

     9 : GlnLeuAlaSerTyrGlyAlaGluLeuSerSerGluAlaCysArgGluLeuGlyPheSer :    28
         ||||||:!!:!!|||||||||!!:||||||||||||||||||||||||||||||||||||
         GlnLeuSerAlaTyrGlyAlaAspLeuSerSerGluAlaCysArgGluLeuGlyPheSer
 53617 : cagCTGTCGGCATACGGAGCTGATCTGTCGTCTGAGGCATGCAGGGAGCTGGGCTTCTCC : 53560

    29 : SerAsnLeuLeuCysSerSerCysGluLeuLeuGlyGlnPheSerLeuAsnGlnLeuAsp :    48
         ||||||||||||||||||||||||!!:|||||||||:!!|||||||||!.!:!!|||.!.
         SerAsnLeuLeuCysSerSerCysAspLeuLeuGlyGluPheSerLeuThrLysLeuGln
 53559 : AGCAACCTGCTGTGTAGCTCCTGTGACCTGCTCGGGGAGTTCAGCCTCACCAAGCTCCAG : 53500

    49 : LeuProCysArgGlnCysCysGlnGluGluAlaGlnLeuGluAsnArgLys  >>>> Ta :    66
         ! !  !||||||||||||||||||:!!|||||||||:!!|||   ||||||         
         ProGlyCysArgGlnCysCysGlnGlnGluAlaGlnMetGluAlaArgLys++       
 53499 : CCCGGCTGCCGGCAGTGCTGTCAGCAGGAGGCCCAGATGGAAGCGCGCAAGgt....... : 53444

    67 : rget Intron 1 >>>>  LeuTyrProGlyAlaIleLeuGluValCysGlyUnkLysL :    79
           2530 bp           |||||| !!||||||||||||||||||||||||   ||||
                           ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysL
 53443 : ..................agCTCTATGCTGGGGCCATCCTCGAGGTGTGTGGATGAAAAC : 50877

    80 : euGlyArgPheProGlnValGln{A}  >>>> Target Intron 2 >>>>  {la}P :    88
         |||||||||||||||||||||||{|}            496 bp           {||}|
         euGlyArgPheProGlnValGln{A}++                         ++{la}P
 50876 : TGGGGAGGTTCCCCCAAGTCCAA{G}gt.........................ag{ct}t : 50354

    89 : heValArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys  >>>> Target :   104
         |||||||||||||||||||||||:!!|||!:!|||||||||||||||            1
         heValArgSerAspLysProLysMetPheLysGlyLeuGlnIleLys++           
 50353 : TTGTCAGGAGTGACAAGCCAAAAATGTTCAAGGGTCTTCAGATCAAGgt........... : 50304

   105 :  Intron 3 >>>>  TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAs :   118
         78 bp           ||||||||||||||||||||||||||||||||||||||||||||
                       ++TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAs
 50303 : ..............agTACGTTAGAGGCTCAGATCCTGTATTAAAGCTTTTGGACGATAA : 50086

   119 : nGlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluPh :   138
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         nGlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluPh
 50085 : CGGGAACATCGCTGAAGAGCTCAGCATCCTCAAGTGGAACACAGACAGCGTAGAGGAGTT : 50026

   139 : eLeuSerGluLysLeuGluArgIle :   146
         ||||||||||||||||!!:||||||
         eLeuSerGluLysLeuAspArgIle
 50025 : CCTGAGTGAGAAATTAGACCGGATA : 50000

vulgar: SPP00000632_2.0 8 146 . JXSJ01000006.1:subseq(2230275,103608) 53617 49999 - 607 M 57 171 5 0 2 I 0 2526 3 0 2 M 21 63 S 0 1 5 0 2 I 0 492 3 0 2 S 1 2 M 16 48 5 0 2 I 0 174 3 0 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	gene	50000	53617	607	-	.	gene_id 1 ; sequence SPP00000632_2.0 ; gene_orientation +
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	cds	53447	53617	.	-	.	
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	exon	53447	53617	.	-	.	insertions 0 ; deletions 0
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	splice5	53445	53446	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	intron	50917	53446	.	-	.	intron_id 1
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	splice3	50917	50918	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	cds	50853	50916	.	-	.	
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	exon	50853	50916	.	-	.	insertions 0 ; deletions 0
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	splice5	50851	50852	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	intron	50357	50852	.	-	.	intron_id 2
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	splice3	50357	50358	.	-	.	intron_id 1 ; splice_site "ag"
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	cds	50307	50356	.	-	.	
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	exon	50307	50356	.	-	.	insertions 0 ; deletions 0
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	splice5	50305	50306	.	-	.	intron_id 3 ; splice_site "GT"
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	intron	50129	50306	.	-	.	intron_id 3
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	splice3	50129	50130	.	-	.	intron_id 2 ; splice_site "AG"
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	cds	50000	50128	.	-	.	
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	exon	50000	50128	.	-	.	insertions 0 ; deletions 0
JXSJ01000006.1:subseq(2230275,103608)	exonerate:protein2genome:local	similarity	50000	53617	607	-	.	alignment_id 1 ; Query SPP00000632_2.0 ; Align 53618 9 171 ; Align 50917 66 63 ; Align 50355 88 48 ; Align 50129 104 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis