TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000632_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Zebrafish

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun ...  88.2    6e-19
  JXSJ01000111.1 Miichthys miiuy scaffold111, whole genome shotgu...  65.5    3e-11
  JXSJ01000030.1 Miichthys miiuy scaffold30, whole genome shotgun...  43.9    2e-04


> JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun 
sequence
Length=7996890

 Score = 88.2 bits (217),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 51/68 (75%), Gaps = 6/68 (9%)
 Frame = -3

Query  79       LGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEF  138
                L   P + +  RS  P        +YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEF
Sbjct  2280460  LPNTPPLFSLSRSPPPTR------QYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEF  2280299

Query  139      LSEKLERI  146
                LSEKL+RI
Sbjct  2280298  LSEKLDRI  2280275


 Score = 62.8 bits (151),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 50/55 (91%), Gaps = 0/55 (0%)
 Frame = -3

Query  12       SYGAELSSEACRELGFssnllcsscellGQFSLNQLDLPCRQCCQEEAQLENRKL  66
                +YGA+LSSEACRELGFSSNLLCSSC+LLG+FSL +L   CRQCCQ+EAQ+E RK+
Sbjct  2283883  AYGADLSSEACRELGFSSNLLCSSCDLLGEFSLTKLQPGCRQCCQQEAQMEARKV  2283719


 Score = 40.8 bits (94),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/23 (83%), Positives = 20/23 (87%), Gaps = 0/23 (0%)
 Frame = -1

Query  65       KLYPGAILEVCGUKLGRFPQVQA  87
                +LY GAILEVCG KLGRFPQVQ 
Sbjct  2281194  QLYAGAILEVCG*KLGRFPQVQG  2281126


 Score = 35.8 bits (81),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 15/17 (88%), Positives = 17/17 (100%), Gaps = 0/17 (0%)
 Frame = -2

Query  87       AFVRSDKPKLFRGLQIK  103
                AFVRSDKPK+F+GLQIK
Sbjct  2280632  AFVRSDKPKMFKGLQIK  2280582


> JXSJ01000111.1 Miichthys miiuy scaffold111, whole genome shotgun 
sequence
Length=906342

 Score = 65.5 bits (158),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 35/56 (63%), Positives = 41/56 (73%), Gaps = 2/56 (4%)
 Frame = +2

Query  69      GAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEE  124
               GAIL++CG KLGR  + QAFVRS K K F+ LQ+ YVR SDP  KLLDDNGN   +
Sbjct  290099  GAILKMCG*KLGR--EDQAFVRSKKMKTFKCLQVNYVRDSDPE*KLLDDNGNTGRQ  290260


> JXSJ01000030.1 Miichthys miiuy scaffold30, whole genome shotgun 
sequence
Length=3550406

 Score = 43.9 bits (102),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/34 (65%), Positives = 24/34 (71%), Gaps = 0/34 (0%)
 Frame = -3

Query  108     SDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE  141
               SDP LKL DD  N+ EELSILK  T  V+E LSE
Sbjct  531165  SDPALKLQDDKRNVTEELSILKMKTGRVQEVLSE  531064



Lambda      K        H        a         alpha
   0.322    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 7612659202


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40