Command line: [exonerate -m p2g --showtargetgff -q secs_zf.aa.fa.canviat -t genomesecs_JXSJ01000055.1.fa]
Hostname: [ws101071U]

C4 Alignment:
------------
         Query: SPP00000631_2.0 # Protein # Selenocysteine synthase (SecS) # Zebrafish 
        Target: JXSJ01000055.1:subseq(1599664,6291) Miichthys miiuy scaffold55, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 569
   Query range: 0 -> 135
  Target range: 2999 -> 3791

    1 : MetAsnSerGluAsnPheArgLeuSerGluLysLeuValSerAlaSerTyrValArgGlnGl :   21
        ||||||.!!|||||||||!!!||||||||||||:!!|||||| !!:!!|||:!!||||||||
        MetAsnGlyGluAsnPheSerLeuSerGluLysIleValSerProAlaTyrIleArgGlnGl
 3000 : aTGAACGGTGAAAACTTCAGCCTGAGTGAGAAGATCGTGTCACCCGCCTACATTCGTCAGGG : 3060

   22 : yLeuAspAlaArgArgGlyHisGluGlnLeuIleArgArgLeuLeuAspGln  >>>> Tar :   39
        |  !.!.|||||||||.!!||||||||||||||||||!.!||||||!!:|||          
        ySerGlnAlaArgArgSerHisGluGlnLeuIleArgHisLeuLeuGluGln++        
 3061 : GAGCCAGGCGCGTCGTAGCCATGAGCAGCTCATCAGACACTTACTGGAGCAGgt........ : 3116

   40 : get Intron 1 >>>>  GlyLysCysProGluGluGlyTrpSerGluSerThrIleGluL :   53
          80 bp            |||||||||||||||||||||||||||||||||||||||||||
                         ++GlyLysCysProGluGluGlyTrpSerGluSerThrIleGluL
 3117 : .................agGGTAAGTGTCCGGAGGAGGGATGGAGCGAGAGCACCATAGAGC : 3236

   54 : euPheLeuAsnGluLeuAlaValMetAspSerAsnAsnPheLeuGlyAsnCysGlyValGly :   73
        ||||||||||||||||||||||||||||||||||||||||||||.!!|||||||||||||||
        euPheLeuAsnGluLeuAlaValMetAspSerAsnAsnPheLeuSerAsnCysGlyValGly
 3237 : TCTTCTTGAATGAGCTGGCTGTGATGGACAGCAATAATTTCCTCAGCAACTGCGGcgtggga : 3296

   74 : GluArgGluGlyArgValAlaSerSerLeuValAlaArgArgHisTyr{Ar}  >>>> Tar :   90
        ||||||||||||||||||||||||||||||||||||||||||||||||{||}          
        GluArgGluGlyArgValAlaSerSerLeuValAlaArgArgHisTyr{Ar}++        
 3297 : gagagggaaggcCGGGTGGCATCCAGCCTTGTGGCAAGACGACATTAC{AG}gt........ : 3351

   91 : get Intron 2 >>>>  {g}LeuIleHisGlyIleGlyArgSerGlyAspIleAlaAlaV :  104
          307 bp           {|}||||||||||||||||||||||||||||||||||||||||
                         ++{g}LeuIleHisGlyIleGlyArgSerGlyAspIleAlaAlaV
 3352 : .................ag{G}TTGATCCATGGCATAGGTCGGTCAGGTGACATCGCTGCTG : 3696

  105 : alGlnProLysAlaAlaGlySerSerLeuLeuAsnLysIleThrAsnSerValValLeuAsp :  124
        ||||||||||||||||||||||||||||||||||||||:!:|||||||||||||||||||||
        alGlnProLysAlaAlaGlySerSerLeuLeuAsnLysLeuThrAsnSerValValLeuAsp
 3697 : TTCAGCCCAAAGCAGCAGGATCCAGTCTGCTTAACAAGCTGACCAATTCAGTTGTGTTGGAC : 3756

  125 : ValLeuLysLeuThrGlyValArgSerValSer :  135
        :!!|||||||||:!!|||:!!  !! !:!!|||
        IleLeuLysLeuSerGlyMetTyrMetLeuSer
 3757 : ATCTTAAAGCTCTCAGGTATGTATATGTTATCA : 3791

vulgar: SPP00000631_2.0 0 135 . JXSJ01000055.1:subseq(1599664,6291) 2999 3791 + 569 M 38 114 5 0 2 I 0 76 3 0 2 M 51 153 S 0 2 5 0 2 I 0 303 3 0 2 S 1 1 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-28
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	gene	3000	3791	569	+	.	gene_id 1 ; sequence SPP00000631_2.0 ; gene_orientation +
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	cds	3000	3113	.	+	.	
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	exon	3000	3113	.	+	.	insertions 0 ; deletions 0
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	splice5	3114	3115	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	intron	3114	3193	.	+	.	intron_id 1
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	splice3	3192	3193	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	cds	3194	3348	.	+	.	
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	exon	3194	3348	.	+	.	insertions 0 ; deletions 0
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	splice5	3349	3350	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	intron	3349	3655	.	+	.	intron_id 2
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	splice3	3654	3655	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	cds	3656	3791	.	+	.	
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	exon	3656	3791	.	+	.	insertions 0 ; deletions 0
JXSJ01000055.1:subseq(1599664,6291)	exonerate:protein2genome:local	similarity	3000	3791	569	+	.	alignment_id 1 ; Query SPP00000631_2.0 ; Align 3000 1 114 ; Align 3194 39 153 ; Align 3657 91 135
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis