Command line: [exonerate -m p2g --showtargetgff -q secs2_zf.aa.fa.canviat -t genomesecs2_JXSJ01000055.1.fa]
Hostname: [ws101170u]

C4 Alignment:
------------
         Query: SPP00000631_2.0 # Protein # Selenocysteine synthase (SecS) # Zebrafish 
        Target: JXSJ01000055.1:subseq(1607099,2691) Miichthys miiuy scaffold55, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 438
   Query range: 89 -> 205
  Target range: 1499 -> 2304

   90 : ArgLeuIleHisGlyIleGlyArgSerGlyAspIleAlaAlaValGlnProLysAlaAlaGl :  110
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ArgLeuIleHisGlyIleGlyArgSerGlyAspIleAlaAlaValGlnProLysAlaAlaGl
 1500 : AGGTTGATCCATGGCATAGGTCGGTCAGGTGACATCGCTGCTGTTCAGCCCAAAGCAGCAGG : 1560

  111 : ySerSerLeuLeuAsnLysIleThrAsnSerValValLeuAspValLeuLysLeuThr{G}  :  130
        |||||||||||||||||||:!:|||||||||||||||||||||:!!|||||||||:!!{|} 
        ySerSerLeuLeuAsnLysLeuThrAsnSerValValLeuAspIleLeuLysLeuSer{G}+
 1561 : ATCCAGTCTGCTTAACAAGCTGACCAATTCAGTTGTGTTGGACATCTTAAAGCTCTCA{G}g : 1621

  131 :  >>>> Target Intron 1 >>>>  {ly}ValArgSerValSerSerCysPheValVal :  140
                   457 bp           {||}|||!:!!!!|||:!!|||||||||||||||
        +                         ++{ly}ValGlnArgValAlaSerCysPheValVal
 1622 : t.........................ag{GT}GTCCAGAGGGTGGCGAGCTGCTTTGTTGTT : 2107

  141 : ProMetAlaThrGlyMetSerLeuThrLeuCysPheLeuThrLeuArgHisArgArgProLy :  161
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ProMetAlaThrGlyMetSerLeuThrLeuCysPheLeuThrLeuArgHisArgArgProLy
 2108 : CCCATGGCGACAGGAATGAGCTTGACACTGTGCTTCCTGACCCTTCGTCATCGGCGACCCAA : 2170

  162 : sAlaArgTyrIleLeuTrpProArgIleAspGlnLysSerCysPheLysSerMetValThrA :  182
        |||||||||||||:!!|||||||||||||||||||||||||||||||||:!!|||:!!||||
        sAlaArgTyrIleIleTrpProArgIleAspGlnLysSerCysPheLysAlaMetIleThrA
 2171 : AGCCCGCTACATCATTTGGCCTCGTATCGACCAGAAGTCCTGTTTCAAAGCCATGATCACAG : 2233

  183 : laGlyPheGluProValValIleGluAsnValLeuGluGlyAspGluLeuArgThrAsnLeu :  202
        |||||  !!!:! !:!!  !:::......      ...      :::::!  !  !|||:!!
        laGlyAspAspHisIleSerValArgGlnLysLysAsnLysIleGlnValTyrLeuAsnVal
 2234 : CAGGTGATGATCACATCAGTGtccgacaaaaaaaaaataaaattcaggtATACTTAAACGTT : 2293

  203 : GluGluVal :  205
        !!:.!.:!!
        AspAsnMet
 2294 : GACAATATG : 2304

vulgar: SPP00000631_2.0 89 205 . JXSJ01000055.1:subseq(1607099,2691) 1499 2304 + 438 M 40 120 S 0 1 5 0 2 I 0 453 3 0 2 S 1 2 M 75 225
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-12-02
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	gene	1500	2304	438	+	.	gene_id 1 ; sequence SPP00000631_2.0 ; gene_orientation +
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	cds	1500	1620	.	+	.	
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	exon	1500	1620	.	+	.	insertions 0 ; deletions 0
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	splice5	1621	1622	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	intron	1621	2077	.	+	.	intron_id 1
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	splice3	2076	2077	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	cds	2078	2304	.	+	.	
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	exon	2078	2304	.	+	.	insertions 0 ; deletions 0
JXSJ01000055.1:subseq(1607099,2691)	exonerate:protein2genome:local	similarity	1500	2304	438	+	.	alignment_id 1 ; Query SPP00000631_2.0 ; Align 1500 90 120 ; Align 2080 131 225
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis