Command line: [exonerate -m p2g --showtargetgff -q secp43_zf.aa.fa.canviat -t genomesecp43_JXSJ01000129.1.fa]
Hostname: [ws101072u]

C4 Alignment:
------------
         Query: SPP00000664_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Zebrafish 
        Target: JXSJ01000129.1:subseq(187740,103192) Miichthys miiuy scaffold129, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 313
   Query range: 74 -> 174
  Target range: 51713 -> 49999

    75 : ProLysArgPheLysLeuSerArgSerAsnTyrGlyLysGlnGlyGlu{Se}  >>>> T :    91
         |||! !||||||||||||!:!|||:!!!.!!:!|||||||||! !!  {.!}        
         ProThrArgPheLysLeuAsnArgAlaThrPheGlyLysGlnAspGly{Gl}++      
 51713 : CCCACAAGATTCAAGTTAAACCGAGCCACCTTTGGGAAGCAAGACGGC{GG}gt...... : 51661

    92 : arget Intron 1 >>>>  {r}SerThrPheSerLeuPheValSerAspLeuThrPro :   103
             140 bp           {!}..!! !!:!||||||||||||.!!||||||||||||
                            ++{y}GlnMetTyrSerLeuPheValGlyAspLeuThrPro
 51660 : ...................ag{T}CAGATGTATTCTCTGTTTGTGGGAGATCTGACTCCA : 51489

   104 : AspValAspAspGlyMetLeuTyrGluPhePheHisTyrHisPheSerSerCysCysSer :   123
         !!:||||||||||||||||||||||||||||||:!! !!!.!!:! !!|||||| !!.!!
         GluValAspAspGlyMetLeuTyrGluPhePheTyrAsnArgTyrProSerCysArgGly
 51488 : GAGGTGGATGATGGAATGCTCTATGAGTTCTTTTACAACCGTTACCCTTCCTGTCGTGGT : 51429

   124 : GlyLysIleValLeuAspAlaAsnGlyHisSer{Ly}  >>>> Target Intron 2  :   135
         ||||||:!:|||||||||::!!  |||:!!|||{||}           1274 bp     
         GlyLysValValLeuAspSerMetGlyAsnSer{Ly}++                     
 51428 : GGAAAAGTGGTGCTGGACAGCATGGGCAACTCC{AA}gt..................... : 51389

   136 : >>>>  {s}CysCysGlyPheValSerPheGluSerGluArgGluGlnLysArgAlaLeu :   152
               {|} !!||||||||||||..!|||  !..!||||||  !|||||||||||||||
             ++{s}GlyCysGlyPheValGlnPheProAspGluArgLeuGlnLysArgAlaLeu
 51388 : ....ag{G}GGCTGTGGCTTTGTTCAGTTCCCAGATGAGCGGCTACAGAAGCGAGCGTTA : 50068

   153 : ValAspLeuGlnGlyAlaThrGlyLeuGlyLysLysAlaLeuArgLeuSerLeuAlaSer :   172
         ! !!!:! !|||||||||..!|||||||||   ||| !!||||||||||||||||||:!!
         GluGluCysGlnGlyAlaValGlyLeuGlyGlyLysProLeuArgLeuSerLeuAlaAla
 50067 : GAGGAGTGTCAGGGTGCTGTTGGACTGGGTGGTAAACCTCTGAGACTCAGTCTGGCTGCT : 50008

   173 : SerArg :   174
         !:!!:!
         AsnLys
 50007 : AACAAG : 50000

vulgar: SPP00000664_2.0 74 174 . JXSJ01000129.1:subseq(187740,103192) 51713 49999 - 313 M 16 48 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 43 129 S 0 2 5 0 2 I 0 1270 3 0 2 S 1 1 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	gene	50000	51713	313	-	.	gene_id 1 ; sequence SPP00000664_2.0 ; gene_orientation +
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	cds	51664	51713	.	-	.	
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	exon	51664	51713	.	-	.	insertions 0 ; deletions 0
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	splice5	51662	51663	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	intron	51524	51663	.	-	.	intron_id 1
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	splice3	51524	51525	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	cds	51392	51523	.	-	.	
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	exon	51392	51523	.	-	.	insertions 0 ; deletions 0
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	splice5	51390	51391	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	intron	50118	51391	.	-	.	intron_id 2
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	splice3	50118	50119	.	-	.	intron_id 1 ; splice_site "AG"
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	cds	50000	50117	.	-	.	
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	exon	50000	50117	.	-	.	insertions 0 ; deletions 0
JXSJ01000129.1:subseq(187740,103192)	exonerate:protein2genome:local	similarity	50000	51713	313	-	.	alignment_id 1 ; Query SPP00000664_2.0 ; Align 51714 75 48 ; Align 51523 92 129 ; Align 50117 136 117
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis