TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000664_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Zebrafish Length=175 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000129.1 Miichthys miiuy scaffold129, whole genome shotgu... 62.8 3e-10 JXSJ01000353.1 Miichthys miiuy scaffold353, whole genome shotgu... 46.2 7e-05 JXSJ01000502.1 Miichthys miiuy scaffold502, whole genome shotgu... 45.8 8e-05 JXSJ01000398.1 Miichthys miiuy scaffold398, whole genome shotgu... 45.8 1e-04 JXSJ01003653.1 Miichthys miiuy scaffold3653, whole genome shotg... 39.7 0.010 JXSJ01000017.1 Miichthys miiuy scaffold17, whole genome shotgun... 38.9 0.022 JXSJ01000066.1 Miichthys miiuy scaffold66, whole genome shotgun... 38.1 0.033 JXSJ01005206.1 Miichthys miiuy scaffold5206, whole genome shotg... 37.7 0.041 > JXSJ01000129.1 Miichthys miiuy scaffold129, whole genome shotgun sequence Length=732754 Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/51 (61%), Positives = 38/51 (75%), Gaps = 4/51 (8%) Frame = -2 Query 91 SSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSK----CC 137 S +SLFV DLTP+VDDGMLYEFF+ + SC GK+VLD+ G+SK CC Sbjct 239265 SQMYSLFVGDLTPEVDDGMLYEFFYNRYPSCRGGKVVLDSMGNSK*VLTCC 239113 Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 21/33 (64%), Positives = 27/33 (82%), Gaps = 0/33 (0%) Frame = -3 Query 9 LEPYMDEDFICRAFAQMGETVVKIRLIRDKITG 41 LE YMDE FI RAF+ MGE V+ +R+IR+K+TG Sbjct 240932 LETYMDEKFITRAFSTMGEQVINVRIIRNKMTG 240834 Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/38 (66%), Positives = 29/38 (76%), Gaps = 0/38 (0%) Frame = -1 Query 137 CGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174 CGFV F ER QKRAL + QGA GLG K LRLSLA+++ Sbjct 237853 CGFVQFPDERLQKRALEECQGAVGLGGKPLRLSLAANK 237740 > JXSJ01000353.1 Miichthys miiuy scaffold353, whole genome shotgun sequence Length=300105 Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 20/67 (30%), Positives = 38/67 (57%), Gaps = 0/67 (0%) Frame = +1 Query 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62 ++++GNL+P +DE + F+ G + +++RD TG + GY F+ A A + + Sbjct 255436 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 255615 Query 63 KVNGKPL 69 +NG+ L Sbjct 255616 AMNGQYL 255636 Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Frame = +1 Query 44 AGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTP 103 +GYGFVE + + ++ +N L G K ++++++ + ++F+ +L P Sbjct 255295 SGYGFVEFLSEEDADYAIKIMNMIKLYG----KPIRVNKASAHNKNLDVGANIFIGNLDP 255462 Query 104 DVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQG 157 ++D+ +LY+ F + KI+ D + G+SK F++F S A+ + G Sbjct 255463 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 255627 > JXSJ01000502.1 Miichthys miiuy scaffold502, whole genome shotgun sequence Length=214714 Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 28/32 (88%), Gaps = 0/32 (0%) Frame = +2 Query 43 NAGYGFVELADDTAVERCLRKVNGKPLPGATP 74 +AGY FVELAD+ +V+RC++++NGK +PG+ P Sbjct 80819 SAGYCFVELADEASVDRCVQRLNGKLVPGSNP 80914 Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/33 (52%), Positives = 26/33 (79%), Gaps = 0/33 (0%) Frame = +1 Query 9 LEPYMDEDFICRAFAQMGETVVKIRLIRDKITG 41 L+PYMDE+FI +AF+ MGE+ +++I +ITG Sbjct 80134 LDPYMDENFIKQAFSAMGESPFGVKIITHRITG 80232 > JXSJ01000398.1 Miichthys miiuy scaffold398, whole genome shotgun sequence Length=270393 Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 39/63 (62%), Gaps = 1/63 (2%) Frame = -3 Query 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62 +L++ L P ED + + F++ G+ + ++RL+RD +TG + GY F+E ++ +V R R Sbjct 73933 TLFVARLNPQTTEDKLHQVFSKYGD-IQRLRLVRDIVTGFSKGYAFIEYKEERSVVRARR 73757 Query 63 KVN 65 N Sbjct 73756 DAN 73748 > JXSJ01003653.1 Miichthys miiuy scaffold3653, whole genome shotgun sequence Length=3636 Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/73 (29%), Positives = 40/73 (55%), Gaps = 5/73 (7%) Frame = +1 Query 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60 + +++G L+ ++E+ + F+Q G+ + K +I +K TGK G+GFV D A ++ Sbjct 1405 VKKIFVGGLKDDIEEEHLTEYFSQYGQ-IEKAEVISEKETGKKRGFGFVYFTDHDAADKA 1581 Query 61 L----RKVNGKPL 69 + VNG + Sbjct 1582 VVVKFHTVNGHKV 1620 > JXSJ01000017.1 Miichthys miiuy scaffold17, whole genome shotgun sequence Length=4887435 Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/77 (30%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +1 Query 8 NLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGK 67 NL P DE + + F G V +++IRD T K G+GFV + + + +NG Sbjct 4327858 NLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 4328034 Query 68 PLPGATPPKRFKLSRSN 84 L FK S+ + Sbjct 4328035 RLGDRVLQVSFKTSKQH 4328085 > JXSJ01000066.1 Miichthys miiuy scaffold66, whole genome shotgun sequence Length=1661281 Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust. Identities = 17/37 (46%), Positives = 24/37 (65%), Gaps = 0/37 (0%) Frame = -1 Query 33 RLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPL 69 +++RDK TGK GYGFV D R +R++NG+ L Sbjct 146878 QVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGQCL 146768 > JXSJ01005206.1 Miichthys miiuy scaffold5206, whole genome shotgun sequence Length=1180 Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Frame = +3 Query 4 LWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELAD-DTAVERCLR 62 +++G ++ +++ + + F+Q G V K +I DK TG+ G+GFV D D+A + L Sbjct 621 IFVGGVKDHIEAENLTEYFSQFG-VVEKAEIISDKQTGRKRGFGFVFFEDTDSATKAVLT 797 Query 63 K---VNGKPL 69 K +NG + Sbjct 798 KYHTINGNKV 827 Lambda K H a alpha 0.321 0.137 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12960905832 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40