TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000665_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Zebrafish Length=316 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000502.1 Miichthys miiuy scaffold502, whole genome shotgu... 73.2 7e-13 JXSJ01000129.1 Miichthys miiuy scaffold129, whole genome shotgu... 59.7 2e-08 JXSJ01000353.1 Miichthys miiuy scaffold353, whole genome shotgu... 52.8 4e-06 JXSJ01003653.1 Miichthys miiuy scaffold3653, whole genome shotg... 41.6 0.009 JXSJ01005206.1 Miichthys miiuy scaffold5206, whole genome shotg... 41.2 0.011 > JXSJ01000502.1 Miichthys miiuy scaffold502, whole genome shotgun sequence Length=214714 Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 1/48 (2%) Frame = +1 Query 93 PEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSR 140 P PEFSVFVGDL SEVDD+QLHQ F KK+ SCKGAKVVTD YG SR Sbjct 82783 PHFRPEFSVFVGDLASEVDDFQLHQVF-KKYLSCKGAKVVTDQYGYSR 82923 Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/33 (97%), Positives = 33/33 (100%), Gaps = 0/33 (0%) Frame = +2 Query 46 GSAGYCFVEMADEASVDRCVQRLNGKLVPGSNP 78 GSAGYCFVE+ADEASVDRCVQRLNGKLVPGSNP Sbjct 80816 GSAGYCFVELADEASVDRCVQRLNGKLVPGSNP 80914 Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/33 (88%), Positives = 31/33 (94%), Gaps = 0/33 (0%) Frame = +1 Query 13 LDPYMDENFIKQAFSTMGETAFGVKIITHRVTG 45 LDPYMDENFIKQAFS MGE+ FGVKIITHR+TG Sbjct 80134 LDPYMDENFIKQAFSAMGESPFGVKIITHRITG 80232 Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/57 (53%), Positives = 38/57 (67%), Gaps = 1/57 (2%) Frame = +3 Query 123 FPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179 + C G + + RGYGFVKF +E+EQKKA+EE Q LGGKP+R+SIAV K Sbjct 83265 YGVCGGVETRCNCCLTCRGYGFVKFGEESEQKKAIEECQGTM-LGGKPLRLSIAVAK 83432 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 33/41 (80%), Gaps = 0/41 (0%) Frame = +1 Query 270 DPNPQVDVEELNRQYMERSEELYDSLMECHWLPMDTITSDI 310 +P P+ DVE+ N+ +M+RSEELYD++M+C W P+D++ S I Sbjct 84202 EPIPECDVEQWNKDFMQRSEELYDAMMDCRWEPIDSVNSPI 84324 > JXSJ01000129.1 Miichthys miiuy scaffold129, whole genome shotgun sequence Length=732754 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/41 (66%), Positives = 32/41 (78%), Gaps = 0/41 (0%) Frame = -1 Query 139 SRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179 RG GFV+F DE QK+ALEE Q A GLGGKP+R+S+A NK Sbjct 237862 CRGCGFVQFPDERLQKRALEECQGAVGLGGKPLRLSLAANK 237740 Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/42 (60%), Positives = 33/42 (79%), Gaps = 0/42 (0%) Frame = -2 Query 99 FSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSR 140 +S+FVGDLT EVDD L++FF ++PSC+G KVV D GNS+ Sbjct 239256 YSLFVGDLTPEVDDGMLYEFFYNRYPSCRGGKVVLDSMGNSK 239131 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 33/48 (69%), Gaps = 0/48 (0%) Frame = -2 Query 268 SEDPNPQVDVEELNRQYMERSEELYDSLMECHWLPMDTITSDISMMNG 315 S DP+ ++DV E NR++ME SEELYD+L+ECHW P + T M + Sbjct 236067 SADPSLELDVVEANRKFMELSEELYDALIECHWQPAELSTEQDCMTSS 235924 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/33 (58%), Positives = 25/33 (76%), Gaps = 0/33 (0%) Frame = -3 Query 13 LDPYMDENFIKQAFSTMGETAFGVKIITHRVTG 45 L+ YMDE FI +AFSTMGE V+II +++TG Sbjct 240932 LETYMDEKFITRAFSTMGEQVINVRIIRNKMTG 240834 > JXSJ01000353.1 Miichthys miiuy scaffold353, whole genome shotgun sequence Length=300105 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 9/137 (7%) Frame = +1 Query 48 AGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYAT-YGKRPEPGPEFSVFVGDL 106 +GY FVE E D ++ +N + G + ++N A+ + K + G ++F+G+L Sbjct 255295 SGYGFVEFLSEEDADYAIKIMNMIKLYG----KPIRVNKASAHNKNLDVGA--NIFIGNL 255456 Query 107 TSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASG 165 E+D+ L+ F + K++ DP GNS+GY F+ F+ + A+E N Sbjct 255457 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA-MNGQY 255633 Query 166 LGGKPIRISIAVNKGNK 182 L +PI +S A K +K Sbjct 255634 LCNRPITVSYAFKKDSK 255684 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 51/114 (45%), Gaps = 2/114 (2%) Frame = +1 Query 6 TSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCV 65 ++++G+LDP +DE + FS G KI+ TG S GY F+ A + D + Sbjct 255433 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 255612 Query 66 QRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFF 119 + +NG+ + + + G+R E + + S+ D + HQ F Sbjct 255613 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQAD--RPHQLF 255768 > JXSJ01003653.1 Miichthys miiuy scaffold3653, whole genome shotgun sequence Length=3636 Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/163 (24%), Positives = 76/163 (47%), Gaps = 14/163 (9%) Frame = +1 Query 1 MFNRMTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTG----GSAGYCFVEMA 56 M +++ L++G L+ D++ +++ F G V ++ ++ G Y E A Sbjct 1120 MTDQLCKLFVGGLNVDTDDDGLRKHFEQYGTLTDCVVVVNKQLQRSRCFGFVTYSAPEEA 1299 Query 57 DEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFS-VFVGDLTSEVDDYQL 115 D A R ++G V + N RPE + +FVG L ++++ L Sbjct 1300 DAAMAARP-HTVDGNAVEVKRAVAREDAN------RPEALAKVKKIFVGGLKDDIEEEHL 1458 Query 116 HQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKAL 157 ++F ++ + A+V+++ G RG+GFV F+D + KA+ Sbjct 1459 TEYF-SQYGQIEKAEVISEKETGKKRGFGFVYFTDHDAADKAV 1584 > JXSJ01005206.1 Miichthys miiuy scaffold5206, whole genome shotgun sequence Length=1180 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/185 (22%), Positives = 81/185 (44%), Gaps = 16/185 (9%) Frame = +3 Query 1 MFNRMTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEAS 60 M ++T L++G L+ E+ +++ F G + V ++ ++ G S + F+ + Sbjct 327 MSTKLTKLFVGGLNVETTEDGVRKYFEQFGSLSDCVVVMNQQL-GRSRCFGFITYSTPEE 503 Query 61 VDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEF-----SVFVGDLTSEVDDYQL 115 D + N +V G K ++ + PE +FVG + ++ L Sbjct 504 ADAAMA-ANPHVVEGHEVELKRAIS-----REDANNPEILTNVKKIFVGGVKDHIEAENL 665 Query 116 HQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRIS 174 ++F +F + A++++D G RG+GFV F D + KA+ + G + + Sbjct 666 TEYF-SQFGVVEKAEIISDKQTGRKRGFGFVFFEDTDSATKAV--LTKYHTINGNKVEVK 836 Query 175 IAVNK 179 A+ K Sbjct 837 KALTK 851 Lambda K H a alpha 0.315 0.133 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 40106043510 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40