------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000302.1:subseq_266058,79392_ Strand = + Positions = 61296 - 61379
 Found by:  Infernal (score=28.97) Covels (score=24.97)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -15.06

         ..(((((((.........(((((((((((((((..................)))))))))))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (({([((((.........{[[{((((({((((((................))))))})))))}]]}......-...))))])}))
 target  GUAUGUUUGGGCUGUUUGUGACGUCCUGGCCCGUAACCUUAAAUACUGAGGUGGGCGAGGAUCGAUGUCCCU-CUGCAGAAGCAC
                           ****            ^^                          ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000302.1:subseq_266058,79392_ Strand = + Positions = 25147 - 25223
 Found by:  Infernal (score=16.94) Covels (score=10.52)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -9.29

         ..(((((((........(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((({(........{[[(((((((((((..................)))))))))))]]}..--..-.)})))))..
 target  CUUUCGUUUUCUCUUUGUGAAGUUGAACUGGCAAUGAAAUUCUAAAGUUCUAGUUCGAUUGAUGU--CA-CACAUGAAUU
                          ****           ^^                         ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000302.1:subseq_266058,79392_ Strand = + Positions = 56634 - 56714
 Found by:  Infernal (score=16.69)
 Stem2 length = 9   Apical loop length = 24   Insertion in stem2 = 0, 0
 Free Energy = -10.36

         ..(((((((.......(((((((((((((........................))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggug-----ggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((((((--....([[{(([((((((........................))))))]))}]]).....-..))))))))..
 target  CUCUCUUUUG--UGAAUGACUGAACGUUUCAGCCUAUGAGGCCAACAGGGAUUAAGCGUGCAUGAGGCCAG-CUUAAAAGAGCA
                         ****            ^^                            ****