------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000006.1:subseq_6104489,103645_ Strand = - Positions = 49756 - 49684
 Found by:  Infernal (score=33.44) Covels (score=33.17)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -19.09

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---....{[[[(((((({((((................))))}))))))]]]}..--..-.))))))...
 target  GAAGUGAUG---UUUAUGAAGGUCUGCGCUGAAGGCAGGAAGACUGCUAGCACAGACUGGAUGC--CC-CCAUCACCCU
                         ****           ^^                         ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000006.1:subseq_6104489,103645_ Strand = + Positions = 4854 - 4921
 Found by:  Infernal (score=12.34) Covels (score=7.29)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -5.36

         ..(((((((.......((((((((((((((.................))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((---(((.{[[{({((({((((...............--))))})))})}]]}----))-)))))})...
 target  CACUAACUU---UAGAUGAUGAUUUAAUGUAAUGAGUGCAGCUUG--ACAUCAAAACUGAU----UU-GAAGUCAUCG
                         ****          ^^                         ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000006.1:subseq_6104489,103645_ Strand = - Positions = 29976 - 29900
 Found by:  Infernal (score=12.16) Covels (score=10.87)
 Stem2 length = 10   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -13.27

         ..(((((((............(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ((((((((((...........([[[((((((((((......-..-----...))))))))))]]]).....-..))))))))))
 target  UGUCACCAUUCCCAUGUCCAUUGAAUAUUUAAUAUUCAAAA-CA-----UCCAUAUUAAAUAGGAGAUCCA-GCGAUGGUGAUA
                              ****            ^^^                      ****                  

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = JXSJ01000006.1:subseq_6104489,103645_ Strand = - Positions = 98512 - 98434
 Found by:  Infernal (score=10.02) Covels (score=7.94)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -13.83

         ..(((((((.......((((((((((((((.......................))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggu------gggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---(...([[{(({((({((((((.................))))))})))}))}]])..--...))))))....
 target  AGAAGUUUU---UUUGUGAUGCUGGGUGCCAGGCAAAAAGAAGUUUCUCAUUUGGCUCUUUGCUGAAAA--UCUAAAGACACAA
                         ****              ^^^                          ****