------- SECIS element -- id:1 -- grade:A ---- Chromosome = JXSJ01000027.1:subseq_151128,104823_ Strand = + Positions = 55372 - 55452 Found by: Infernal (score=25.23) Covels (score=19.8) Stem2 length = 10 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -10.62 ..(((((((.......(((((((((((((((................)))))))))))))))...........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc .({({({((.......{[[{(({((((((((................))))))))}))}]]}.......-...))})})}). target GGUGUUCACUUAUUAAUGACGACUCAGACAGCAAGUCCUACAGUGGCCUGUCUGACUCUGACAAACCGA-GGUGUCACCUCA **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JXSJ01000027.1:subseq_151128,104823_ Strand = - Positions = 35435 - 35360 Found by: Infernal (score=11.66) Covels (score=8.51) Stem2 length = 10 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -18.73 ..(((((((...........(((((((((((((((..................)))))))))))))))........))))))).. model uucggucaugcg----UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((((((...........{[[(((((((((((------..............)))))))))))]]}..--..-.))))))).. target CAGGGAGAGUGGCUGCUGGCUGAAGAGUUGUUCU------GUGAGCUUCGGUCAGGAGCAGCUCUGACCA--AU-CCUUUCCUGA **** ****