------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000021.1:subseq_1465313,104006_ Strand = + Positions = 54505 - 54584
 Found by:  Infernal (score=35.06) Covels (score=32.38)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -20.49

         ..(((((((........(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((((......{[[(({({(((((((................)))))))})}))]]}.....-.))))))))...
 target  UGUGUCUCAGCCGUUUGUGAAGACUUUGCCUGAAAGCCCUCUAUGGGCUGGGCGACGCCUGAUGUUAU-UGCUGAGGCUGC
                          ****           ^^^                        ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000021.1:subseq_1465313,104006_ Strand = - Positions = 80799 - 80724
 Found by:  Infernal (score=13.94) Covels (score=11.64)
 Stem2 length = 13   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -18.26

         ..(((((((.......((((((((((.(((((.................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         (((({((((---....{[[{([(((((((((((...............)))))))))))])}]]}..--..-.))))}))))
 target  UUUCUGAGU---CCAAUGACGGGUCUCCUUAUGAAGAGCUUCCAGCGACAUAAGGAGACAUUGAUAA--AA-CACUCUGGGG
                         ****             ^^                          ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000021.1:subseq_1465313,104006_ Strand = - Positions = 53313 - 53269
 Found by:  Infernal (score=11.62)
 Stem2 length = 12   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -21.82

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         -----------------[[{(((((((((((((.............)))))))))))))}]]------------------
 target  -----------------GACGGGCGAACUUUCCAGGACUGUCUCCCGGAGAGUUCGCCCCGA------------------
                          ***                                       ***