------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000037.1:subseq_972323,101357_ Strand = - Positions = 49532 - 49451
 Found by:  Infernal (score=34.01) Covels (score=30.47)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -24.42

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         .((((((((..........{[[((((((((((((.....--........))))))))))))]]}........-...)))))))).
 target  UACCUGCUGUGAAACUGAAUGAAGCCUCAGGCUGAAAAC--UGUCUGACUGGCCUGAGGUUGAUGCUACAUG-UUCUGGUGGGUU
                            ****           ^^^                       ****                     

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000037.1:subseq_972323,101357_ Strand = + Positions = 77948 - 78028
 Found by:  Infernal (score=15.66) Covels (score=6.54)
 Stem2 length = 8   Apical loop length = 21   Insertion in stem2 = 0, 1
 Free Energy = -8.9

         ..(((((((.......(((((((((((((((...................))))))).)))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggcca-ggcCuGAUGuuu-uuucaugaccggc
         ((((({((((--((..([[((({(((({((.....................))}))).)})))]]).....-))))))})))))
 target  UGCAUCUAUU--UGGAUGAUGACACAAUCUACCACCUGCAGCCCAGUGGCCGGUUUGUUAUCGGAGGCCCA-CAGGUAAAUGUG
                         ****           ^^                             ****                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000037.1:subseq_972323,101357_ Strand = + Positions = 57657 - 57734
 Found by:  Infernal (score=12.32) Covels (score=11.88)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -22.66

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuugggg----cgggccaggcCuGAUGuuuuuucaugaccggc
         .((({(((((--(...{[[{((({(((((((((...............)))))))))})))}]]}..--..))))))}))).
 target  UUGCACCCUU--ACAGUGACGUUUCAGCACGUUUUCAUGCAGUAAUGUAAUGUGCUGUGAUAGAUGG--ACUGAGGGAGUAU
                         ****                                         ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = JXSJ01000037.1:subseq_972323,101357_ Strand = - Positions = 37798 - 37736
 Found by:  Infernal (score=10.08)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -6.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(([(([(---....{[[((([(([(((.......--------....)))]))])))]]}----....)]))]))..
 target  GACUGACAU---UCAGUGAAGAACAAUGUGACAAAG--------GGCAGCGGUGGUCUGAU----UUACAGGUAAGCA
                         ****            ^^                       ****