------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000005.1:subseq_6741278,100095_ Strand = - Positions = 48710 - 48637
 Found by:  Infernal (score=24.35) Covels (score=20.92)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -18.01

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....((({((--(...{[[{((({((((((...................))))))})))}]]}----..)))})))....
 target  CUCAAGCAGU--UUUUUGACGCCUUUCUGGGAAUUCCUACAUGUAGGGGCCAGAAUGGCUGAU----ACAGCAGCUAUGU
                         ****           ^^                          ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000005.1:subseq_6741278,100095_ Strand = + Positions = 40318 - 40390
 Found by:  Infernal (score=12.66) Covels (score=11.31)
 Stem2 length = 7   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -9.33

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .([((((((---((..([[{(({{(((((.......--..........)))))}}))}]]).....-.))))))))]).
 target  ACGUUUUGU---UUGAUGAAGGACUUGAACAAACUU--UGCAGGAGCCUUCAAUCCCAGAGGCAGG-AAGGCAAGAAGA
                         ****          ^^^                        ****