------- SECIS element -- id:1 -- grade:A ---- Chromosome = JXSJ01000123.1:subseq_305390,55111_ Strand = - Positions = 49939 - 49873 Found by: Infernal (score=30.82) Covels (score=23.18) Stem2 length = 10 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -16.02 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...({((((---....([[{((((((((((..........-----...))))))))))}]])..--.--.))))})... target ACAGAACAG---UUAAUGAAGGUUCUUGUCUAAACUAUUG-----GAUGGCAAGAGCCAGAAGU--C--UUUGUCUCUG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JXSJ01000123.1:subseq_305390,55111_ Strand = + Positions = 37169 - 37245 Found by: Infernal (score=10.92) Covels (score=5.82) Stem2 length = 8 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -5.6 ..(((((((........(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ..((((((((.......{[[{((((({{(((......--.........)))}})))))}]]}.....-..)))))))).. target UAUUUAUGAGCCAAUGAUGAGAGAUUUUAUUUAAUCC--UGAUUUACUGGUCUGAUUUGGAUCAAUC-CUUUCAUGAAAC **** ^^ ****