------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000024.1:subseq_1365230,101519_ Strand = + Positions = 51550 - 51633
 Found by:  Infernal (score=24.46) Covels (score=18.13)
 Stem2 length = 10   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -16.64

         ..(((((((..........((((((((((.(((((..................))))).))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccug-gcccuAAAcC---cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ..(({((((..........([[{(((((([(((......................)))]))))))}]])..--....))))}))..
 target  UGCACCCAGGCUACAUAAAUGACGAGUGGGGCCCCAAGGCCAAAACGAUAAGCCAGGCACCAUUCUGAGGA--CUCGCUGGCUGGG
                            ****            ^^                            ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000024.1:subseq_1365230,101519_ Strand = + Positions = 56294 - 56360
 Found by:  Infernal (score=11.32) Covels (score=10.78)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -5.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[(((([(({(({(........-----..)}))}))]))))]]}..--..-.)))))))..
 target  GCUCGAGUG---UCUAUGAAAAAAACAUGCGAAUACACA-----AGUCUACGUGUUUUGAUAU--AU-UCAUUUGGCA
                         ****           ^^                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000024.1:subseq_1365230,101519_ Strand = - Positions = 9087 - 9002
 Found by:  Infernal (score=10.14)
 Stem2 length = 7   Apical loop length = 27   Insertion in stem2 = 0, 0
 Free Energy = -7.53

         ..(((((((............(((((((((((((...........................)))))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccgAAAcCcuuuuuggggug--------ggccaggcCuGAUGuuuuuucaugaccggc
         .(((([((((((.........{[[{(({(({(((...........................)))}))}))}]]}----))-))))])))).
 target  UUGUGGUUUCAAUGGGAUUUAUGACGGUCCAGUUCUUUUCAAAGCAAACCACAUAUAGUGUGACAGGCCCUGAU----UU-GAAAAUAUAC
                              ****                                             ****