------- SECIS element -- id:1 -- grade:B ---- Chromosome = JXSJ01000353.1:subseq_1,100308_ Strand = + Positions = 79794 - 79875 Found by: Infernal (score=11.65) Covels (score=11.56) Stem2 length = 8 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -8.63 ..(((((((.............(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..([((((..............([[{(({({(((((.................)))))})}))}]])..--.....))))]).. target UCUGUGGCACUUCCCCCCUCUGUGACGUCGCACACGACAUCCCAUCCUGGGGGCGUGUCUAACAGAAAU--CCCCAGCCAAGAG **** **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JXSJ01000353.1:subseq_1,100308_ Strand = - Positions = 98936 - 98855 Found by: Infernal (score=11.56) Covels (score=9.19) Stem2 length = 7 Apical loop length = 21 Insertion in stem2 = 0, 0 Free Energy = -6.43 ..(((((((.......(((((((((((((((.................)))))))))))))))...........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc ..(((((((.......([[(({(({((((.....................))))}))}))]]).......-...))))))).. target GAGGGGUUAUCAGGAAUGAAACCACAACUCUAAACAAUGUAUUGAAUUCCAGUUUUGUUUGAGAGUUCGU-UAUUGACUCUGG **** ^^^ ****