------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000046.1:subseq_2366260,84740_ Strand = - Positions = 49306 - 49225
 Found by:  Infernal (score=23.78) Covels (score=23.23)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -20.22

         ..(((((((.........((((((((((.(((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..((((({((........{[[(((((((.[(((......-..........)))])))))))]]}.......-..))})))))..
 target  GAUGGUGCAGACAGUGGAUGAAGCGCUCCAGGAUAAAUC-CUAAUGGAGCUCCGGGGCGCUGAUGGACGGU-GGCUUCACCAAU
                           ****            ^^^                       ****                    

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = JXSJ01000046.1:subseq_2366260,84740_ Strand = - Positions = 51007 - 50929
 Found by:  Infernal (score=21.91) Covels (score=20.05)
 Stem2 length = 9   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -16.87

         ..(((((((.......(((((((((((((((..................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ((((({{((---....{[[((((((((((......................))))))))))]]}......-...))}})))))
 target  UGCGGGCAG---CGAAUGAAGAGUUCUGGAAUAAAGCCCAGUCUGGGAGCACCAGAGCUCUGAUGAAGAU-GGACUCGCUGUA
                         ****         ^^                             ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000046.1:subseq_2366260,84740_ Strand = + Positions = 46012 - 46086
 Found by:  Infernal (score=10.46) Covels (score=0.08)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 2, 0
 Free Energy = -10.75

         ..(((((((.......((((((((((.((..(((..................))).))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gc--ccuAAAcC---cuuuuuggggcgg-gccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---(...{[[((({(((.(-{.((....................))}-))))})))]]}----..-)))))))}).
 target  UUAUGCCCA---CUUUUGAGGCCUUUCA-AACCCAAAGUCUCUGAUCAGGGGAGGA-UAAAAGUUGAC----AU-GUGGGCACAC
                         ****              ^^^                           ****