------- SECIS element -- id:1 -- grade:B ----
 Chromosome = JXSJ01000061.1:subseq_620956,101085_ Strand = + Positions = 51161 - 51239
 Found by:  Infernal (score=19.95) Covels (score=14.28)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -18.65

         ..(((((((.........((((((((((.(((((...............))))).))))))))))............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu---u-uuucaugaccggc
         (((((((((.........([[((((((((((((......-..-----...))))))))))))]])........-...)))))))))
 target  CUUUUAAGCCUUAUUAAAUGAGGGUGAUAUUCUGAAAAG-CU-----GAGGGAAUAUUAUCUGAGGCCUUGUA-AGUGCUUAAGAG
                           ****            ^^^                        ****                     

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000061.1:subseq_620956,101085_ Strand = - Positions = 52476 - 52400
 Found by:  Infernal (score=15.82) Covels (score=11.8)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 1, 0
 Free Energy = -13.69

         ..(((((((..........((((((((((.(((((..................)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccug-gcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((({((..........([[(((((((.({((------(((((....)))))))}))))))))]])..--....))}))))).
 target  CAAACAUAUUGCACAUGAAUGAAGCUAGAAUCUG------UGUAACAUUUUGUACAAAUCUAGCUGAGGU--AAUUAUUUGUUUC
                            ****                    ^^                   ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000061.1:subseq_620956,101085_ Strand = + Positions = 95729 - 95824
 Found by:  Infernal (score=13.34) Covels (score=2.56)
 Stem2 length = 11   Apical loop length = 28   Insertion in stem2 = 0, 1
 Free Energy = -11.4

         ..(((((((.......(((((((((((((((............................))))))).))))))))...............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------------cuuuuuggggcgggcca-ggcCuGAUGuu------u-uuucaugaccggc
         ..({(((((.--....{[[((((((((((((............................))))))).)))))]]}...........-...)))))})..
 target  CAUCCUGCUC--CUAAUGAUUGUCCGUUUAUAAAGCGAUAUAAACAGAUUAGUGGAGGGAUGGGCGAGACAGGAUGUGAAAUAGUU-GUUGGCAGUGGC
                         ****           ^^^                                     ****