------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000021.1:subseq_1202833,100743_ Strand = - Positions = 49635 - 49559
 Found by:  Infernal (score=27.57) Covels (score=26.65)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -14.59

         ..(((((((.......(((((((((((((((................))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         ..(((((((.--....{[[((((((((((((................))))))))).)))]]}.....-.-.)))))))..
 target  CAUCAGUAUU--GUUGUGAAGUUCGGUUUUUAAACGGAUCGAAUCCAGAGAACCGAGACUGAUGUUUU-U-CAUACUGGCG
                         ****           ^^^                         ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JXSJ01000021.1:subseq_1202833,100743_ Strand = - Positions = 76247 - 76164
 Found by:  Infernal (score=13.09)
 Stem2 length = 11   Apical loop length = 18   Insertion in stem2 = 1, 0
 Free Energy = -7.1

         ..(((((((.......((((((((((.(((((....................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((({((........([[((((((.({(((((..................)))))})))))))]]).....-....))})))..
 target  AUUAGCCUAAAUUUCAUGAAGUCAUCGUCUGAACAUCCUGGUCUCACCUCAUUCAGUUGUGACUGAAACUAA-GUGAAGCCUGUG
                         ****                ^^                         ****                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000021.1:subseq_1202833,100743_ Strand = - Positions = 89312 - 89237
 Found by:  Infernal (score=13.04) Covels (score=8.36)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -4.33

         ..(((((((..........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(((((..........{[[{(({((((((...................))))))}))}]]}----..-.)))))})..
 target  UAUCUUUCGUGCACCUUUAUGACUGUAUGAUCAGUGACCUGUUGUGGUUGGGGUCAUCCACGAU----UC-UUGAAAAAAU
                            ****                                     ****